Detailed information on CNT30249690


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533956Avena sativaEucalyptus grandis27.8224.3684.71170forward
CNT30292923Avena sativaTriticum aestivum33.0688.695.54202forward
CNT30344811Avena sativaEragrostis tef59.7465.391.78365forward
CNT30582414Avena sativaEchinochloa crusgalli66.7868.9286.52408forward
CNT3040359Avena sativaMarchantia polymorpha21.1117.2284.5129forward

Expression of CNT30249690

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MQKMDCAEHIHLHLVHRLKPASTQPWMYVVHGKRILLEEVWEVEDVEEEVSPDGAGDAAEEEPSGELRPALGGLQLVGLLLASGEGERWRRRTW*

>peptide 2 (42 aa)
RHCHVKIVLPSVHACKRWIVRNIFIYTWYIDSSQHLHSHGCT*

>peptide 3 (44 aa)
MATPYMVRTTLRMVTRPMAPSAPAWPCTGVLRSGPVSAKGPTRR*

Sequence

>CNT30249690
GTCGACATTGCCATGTTAAAATAGTACTCCCCTCCGTGCATGCATGCAAAAGATGGATTGTGCGGAACATATTCATTTACACCTGGTACATAGACTCAAG
CCAGCATCTACACAGCCATGGATGTACGTAGTACATGGTAAGAGAATTCTACTTGAAGAAGTATGGGAGGTCGAGGACGTAGAGGAGGAAGTAAGCCCAG
ACGGCGCCGGAGACGCCGCCGAAGAAGAACCCTCCGGTGAACTGCGCCCAGCCCTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGTCCGGTGAGGG
TGAGCGATGGCGACGCCGTACATGGTGAGGACGACGCTGAGGATGGTGACGAGGCCGATGGCGCCGAGCGCGCCGGCCTGGCCGTGCACGGGGGTGTTGC
GGAGCGGGCCGGTGAGCGCGAAGGGGCCGACGAGGAGGTAGCCGTGCGCGAGGCCGACCTCGATGCCGCGGAGCAGCGGGCTGACGGCGGTGCGGTAGGC
GGGGAGGTTGGAGAGGTACCATGCGACGAGCGGGCTGGAGGTGACCGGCGTCTCCAGGCTGCCGATGAAGGGGTCGCCGTTGATGGGCTGCACCACCTGG
TAGTTTGGCTG