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Detailed information on CNT30249607


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M2T2|PP16A_ARATH, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522980Avena sativaSetaria italica18.1120.1789.71243forward
CNT30437732Avena sativaAegilops tauschii24.3747.688.38327forward
CNT3014485Avena sativaZea mays6.6342.7987.6489forward
CNT30580297Avena sativaEchinochloa crusgalli24.8124.4383.18333forward

Expression of CNT30249607

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSPMRRPPSAPPRSPAPRPIPMPLLFFGGFTACCW*

>peptide 2 (40 aa)
WIENRNNSQKQNILMLKLLFTLPPHEDAQRPALAILAEHN*

>peptide 3 (63 aa)
MCTSPTSRSPRARSARRSTCREPAALAGTVKRSVAFQFGLRPPARSGATRWRERGSPESETSA*

>peptide 4 (78 aa)
MARLSFLQVGSRMVAGTLRPWLLVGRRTGAVGTRRPCLLAGRWPGAGTRPEAEAARTRPGHRTRQRRPDSPRRACRRS*

Sequence

>CNT30249607
GCTGGATCGAAAACAGGAATAATTCACAAAAACAAAATATACTCATGTTAAAACTTCTATTTACATTACCACCACATGAAGATGCACAGCGGCCGGCGCT
GGCGATTTTAGCTGAACATAACTGAAGAAGAAAATCGAAGAACAAAAGAACTCTGGTCGCGTCTTCTGAAGCTCGAACGGTCTAGAAATCGAAGCCACCG
CCGTCGTCGAACCCGGCGTCGTACCCTGCATCGTACCCGCCGGCGTCGCCAATCATGTCACCGATGAGGAGGCCGCCGAGCGCGCCACCGAGGAGTCCCG
CGCCGAGGCCCATCCCCATGCCGCTGCTCTTCTTCGGCGGCTTCACGGCCTGCTGCTGGTAGCCGTACCCTGCCGGCTGCTGCGGTGGGTAGCCGTACCC
GTACCCGCCTTGCTGCGGCGGGGGTGGGTAGCCGTAGCCGGCTGGCTGCTGCGGCGGGTACCCGTAGCCGTACTGCGGGGGCGGGGCGCCGTATGGCGCG
CCGGTGCTTGGGCCGGCCGCGGCGGCTGGGTAGGCCGTGACGGGCTCGCCTGCCTTGGCTGGCTTTCCTGCAGGTGGGTAGCCGGCGGGTGCGGGGTAGG
CGGTGGATGGCTCGCCTGTCTTTCCTGCAGGTGGGTAGCCGGATGGTGGCGGGTACGCTTCGGCCTTGGTTGCTGGTGGGTAGGCGGACTGGGGCGGTGG
GTACGCGTCGGCCTTGCCTGCTGGCGGGTAGGTGGCCTGGTGCGGGTACGCGGCCTGAGGCGGAGGCTGCGCGTACGCGGCCTGGGCACCGTACGCGCCA
GCGCCGGCCTGATTCACCTCGCCGAGCTTGTAGGAGAAGTTGAGGACGCCCTGGGGCTTCCCGGACCCGATCTTCCTGACCTGGTAGGCGACGAACTTGA
CGGGAACCGCCCCGTCGGGCGCCCCGGAGAGCAGCTCGGAGAGCGGGATGTGTACCTCGCCGACGTCGCGGTCGCCGAGGGCGCGCTCGGCGCGGAGGAG
CACGTGTAGGGAGCCCGCGGCGTTGGCGGGCACGGTGAAGCGTAGCGTGGCGTTCCAGTTCGGGTTGCGTCCGCCGGCGCGGTCGGGCGCGACGCGCTGG
CGCGAGCGCGGGTCGCCGGAGAGCGAGACGAGCGCGTAGACCTCCATCCTGGAGAGCAGGTTGACGTCCTTGAGGTCCTTCCCCGAGATCAGGGTCAGCT
CCAGCGCCCTCTGCGCCATGGCGACCGCTCGAGGATCTGATTCCTCCGGTGGGGATTGATTGGGTGGTGGAGAGGGATTTGCCTTTGCGATTTGTGAATT
GTCGGGGAGGGGGACAGATCTGGCTGAGGATGGATGTAACCG