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Detailed information on CNT3024956


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116859Populus trichocarpaOryza nivara15.7920.8685.0687forward

Expression of CNT3024956

Peptides detected in this lncRNA

>peptide 1 (70 aa)
VFTFITLSLCHMCIYIKVCCMHTKIFLPTHKKKKRLIVYVPTDVTHCSVALLFTSLCDLPLVFPREDVYC*

>peptide 2 (35 aa)
FLHSSRYPCVICVFISKCAVCIQRFFFLPIKKRKG*

>peptide 3 (29 aa)
FYIHHVILVSYVYLYQSVLYAYKDFSSYP*

Sequence

>CNT3024956
GTTTTTACATTCATCACGTTATCCTTGTGTCATATGTGTATTTATATCAAAGTGTGCTGTATGCATACAAAGATTTTTCTTCCTACCCATAAAAAAAAGA
AAAGGTTGATTGTATATGTTCCCACTGATGTGACACATTGTTCAGTTGCACTCTTATTTACCAGTTTATGTGATCTTCCCTTAGTTTTTCCTCGTGAAGA
TGTCTATTGTTAACTAATTGACGGGCACGAGGAATAGTGGACACCATACCTCATCGAAAAAGGATGTTATCCAAACACATTTCAAGAATTTTCACTCGTG
AAGATTTTTATATCATTTGATTTCTAAATTTTAAGCGATATGATGTAATAATCATAATAAATACAGATTGCACTTGGAGTTTGTGTGTAGAATTAATCTA
AGATCAATGTCCTATAAGATATACCATATTAGCATTTTGGCATGGTTTTCAACCTGGTAGCCTCTTCACATGAATCCCTGAGTATATAAATTTCATCTGC
CCTTATTGCCTCAAACAGTTGAGTTGGAAGAAATGCATGTTATATTTCATG