Detailed information on CNT30249492


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673222Avena sativaSetaria viridis44.5724.0989.47152forward
CNT30521178Avena sativaSetaria italica30.7921.4787.62105forward
CNT30513228Avena sativaJuglans regia43.9919.2883.33150forward
CNT30403349Avena sativaBeta vulgaris26.125.5785.3989forward
CNT30504596Avena sativaNicotiana attenuata32.5518.0582.88111forward
CNT30300058Avena sativaTriticum aestivum18.4820.3992.0663forward
CNT30136078Avena sativaLolium perenne34.3145.1782.91117forward
CNT30650401Avena sativaRosa chinensis23.469.088580forward
CNT30211728Avena sativaHelianthus annuus22.5829.1787.0177forward
CNT30689645Avena sativaTriticum urartu20.2316.2489.8669forward
CNT30721247Avena sativaTriticum spelta44.8729.1489.54153forward
CNT30367289Avena sativaSorghum bicolor44.5726.6792.11152forward
CNT3022975Avena sativaPopulus trichocarpa26.9813.6985.8792forward
CNT30148668Avena sativaBrachypodium distachyon40.7645.5789.21139forward
CNT30118099Avena sativaOryza nivara43.718.2889.93149forward

Expression of CNT30249492

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MNMAHWALASSARICLAASTMLVSAGCWCRAPRASC*

>peptide 2 (29 aa)
TNLTPQTSGYEIQIIPKQTAMTLVASILL*

Sequence

>CNT30249492
ACTAACCTAACCCCACAGACGAGTGGATACGAGATCCAGATTATTCCAAAACAAACAGCTATGACATTGGTGGCGTCCATCCTCCTTTGAGATTAATGTA
GGGGAGAGCTGCTATATGAATATGGCTCACTGGGCCTTGGCAAGCTCGGCCCGGATCTGCTTGGCGGCATCGACCATGTTGGTGAGCGCAGGATGTTGGT
GTCGAGCACCGCGAGCATCTTGTTGACACGGTCGGCGATCTCCTCCTTGGAGGGGATCCTAGGAGAGTGGATGTCATAGACACCGGGGCCAATGCCAGCA
CCGTACACCACACCCTCACGGAAGACGGAGAGGAGCTTCTC