Detailed information on CNT30249419


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675085Avena sativaSetaria viridis10.7824.3188.68106reverse complement
CNT30389619Avena sativaTriticum turgidum12.7223.2391.2125reverse complement
CNT30456955Avena sativaSaccharum spontaneum10.1735.0990100forward
CNT3014294Avena sativaZea mays9.1620.329090reverse complement
CNT30574883Avena sativaOryza barthii7.4321.687.6773reverse complement
CNT30557683Avena sativaPanicum hallii12.8234.986.51126reverse complement

Expression of CNT30249419

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MCRSRGSSLPYSRPELRYKSTHTSSHPPQLRSRHRPKHTLPHTYKAKLAQRSRSPWRTTRRWTTARRR*

>peptide 2 (69 aa)
AAQEILRQVLKSKGRSRKSVCRCVVRAEVPYPTHARNYAIKAHTLHLILHNSGPGIVQNTHYHTHTKPN*

>peptide 3 (91 aa)
MAHYQEVDYCSEEVRSVAYPARGGGMQEHIVKETFVEEIDRAGRHHGHHGRHGHRGSGHFEVRESRLEEDINTRTGEFHERKENFVVRADD*

>peptide 4 (52 aa)
MDATDTAAPATSRCARAGSRRTSTPAPASSTSARRTSSSGPTTKLCYITRSS*

Sequence

>CNT30249419
TGCTGCTCAAGAAATTCTTAGACAGGTTCTAAAAAGCAAAGGAAGAAGCCGAAAATCAGTGTGCAGATGTGTCGTTCGCGCGGAAGTTCCTTACCCTACT
CACGCCCGGAACTACGCTATAAAAGCACACACACTTCATCTCATCCTCCACAACTCAGGTCCCGGCATCGTCCAAAACACACACTACCACACACATACAA
AGCCAAATTAGCACAACGATCGAGATCACCATGGCGCACTACCAGGAGGTGGACTACTGCTCGGAGGAGGTGAGGTCGGTGGCCTACCCGGCCCGCGGCG
GCGGTATGCAGGAGCACATCGTCAAGGAGACGTTCGTGGAGGAGATCGACAGGGCCGGCCGCCACCACGGTCACCATGGACGCCACGGACACCGCGGCTC
CGGCCACTTCGAGGTGCGCGAGAGCAGGCTCGAGGAGGACATCAACACCCGCACCGGCGAGTTCCACGAGCGCAAGGAGAACTTCGTCGTCAGGGCCGAC
GACTAAGCTTTGTTACATTACACGGAGCTCCTAGCACGCGCACATGTCGTCCTACGTAAGTGTGTGCATGTAATGTACTATGTCAGCATGTTAGTGCTGC
CTCGCACAGGCATACCGTGTGCGTGCTTGGCGCTATTAGCCTAGCGTGCAGCGCTTAAATAAGCTGATGGTGACCTGGAATAAACCTTCTTAGTGCATGA
TACTATGGTGTGTATCTGATGACCGCGTGTAGTACACACTAGTGCACGTTTTGTGTTCGCAAAAAAACAACAGTGCTTGTGATCTTGTGCTAAACTTACC
TCCGACGGAGACACACTAACCATAAACTACCAATTGTTATATACGATGTAGAAAATACCAGCTGTTACATGTATAACCAATGAGGTAAATACAGTTTTGA
TCCCACAACTTGCACGGCGAGAGCAGATTAGTCCCACATCTTGTAAAATGTGTAAAACTAGTCCCACAACTTGCATACCCGGG