Detailed information on CNT30249341


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 5e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298930Avena sativaTriticum aestivum57.3641.7694.81347forward
CNT30666088Avena sativaTriticum dicoccoides57.3643.2794.81347forward
CNT302119Avena sativaZea mays54.0556.4892.66327forward
CNT30358694Avena sativaLactuca sativa20.3327.6484.55123forward
CNT30579578Avena sativaEchinochloa crusgalli53.5539.3789.51324forward
CNT30558912Avena sativaPanicum hallii11.0726.0798.5167forward

Expression of CNT30249341

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRWRVAAEACVAMAMAEVVLGNGRTGEATRA

>peptide 2 (57 aa)
MGRAAVARSRRGRGRPRVLWWPAPASPRRRRRAGPGRGWRGARGRRRAAWRRATRPR*

Sequence

>CNT30249341
GCACGCAGCAGGTAGAAATTAGACGTCGAATGTGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTTCCGATGCTGCGGAAGTTCTGGCCC
ACGCCCTGCCTACCCGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGCACTGCTCCTTGCGCGCCAGCTTGAGGAGGTTGGGGCCCTCGC
GCATGATGGCGGCGCCGCCCGTGGGCATCTCGAAGACCTGCTCCTTGGGGGAGGTCCAGGTGATGACGTAGAACTCCTCCACCTGCGCCTTGCGGAGGAG
GCCGCCCGTGCTGCCGCCGAAGATCGGGGAGGGCGTGGATGGGTCGAGCTGCGGTGGCACGAAGCCGGCGGGGGCGGGGGCGGCCTCGGGTTCTTTGGTG
GCCGGCGCCGGCGAGTCCGAGGCGGCGGCGCAGAGCGGGGCCGGGCCGCGGGTGGAGGGGAGCGCGAGGGAGACGGCGCGCGGCTTGGAGGAGGGCGACC
AGACCGCGGTGATGAGGTGGCGGGTGGCCGCCGAGGCTTGCGTGGCCATGGCCATGGCGGAGGTGGTTCTTGGCAACGGGAGGACAGGAGAGGCCACACG
CGCGC