Detailed information on CNT30249262


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670953Avena sativaSetaria viridis7.9123.5194.01217forward
CNT3098505Avena sativaSolanum tuberosum7.9122.1289.86217forward
CNT30396189Avena sativaTriticum turgidum7.4724.8294.15205forward
CNT30147387Avena sativaMedicago truncatula7.832.0492.99214forward
CNT30435185Avena sativaAegilops tauschii7.9139.6794.01217reverse complement
CNT30657665Avena sativaTriticum dicoccoides2.9926.8993.982forward
CNT30203345Avena sativaHelianthus annuus7.9165.7692.63217reverse complement
CNT30360998Avena sativaLactuca sativa7.7373.192.92212reverse complement

Expression of CNT30249262

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MWLLSGLFPYEKWFLRLIKLAKHFYLEIYTVNFVHFYYMTGVHHWTYVSLCRLHGVPLWLPCYDFTPVEDPTVVSPIRPPKDFVALVVH*

>peptide 2 (52 aa)
MHSICLSQHTIFLGKKHNTSTCSFSGNKRNTYVYSWINTTLPCMKQFFSCIF*

>peptide 3 (56 aa)
LRSFQVRFCSCRSHRSFHGCVDLSSIRIPVSCAKARVRSFGLLFATPAASTSGTTV*

>peptide 4 (47 aa)
MLRAKPIPGCDGWCVHGPGIYSPWHADPRGLPDRRSPLRGAPRCQQE*

>peptide 5 (48 aa)
MLIREAYQTAGVLFVVLRAVNKNEKVQEVNPKELEEEQSEAAAAVSMA*

>peptide 6 (35 aa)
MHIVIVRFLSFNNAYNVSHRIDSWERLYDNVIRNY*

>peptide 7 (32 aa)
TILSGSFLLLPFSSFLSRLRRSIIHTDTCKLC*

>peptide 8 (33 aa)
MDSEILDLVSVLFYIPYILESNKLFSSTKIVRR*

>peptide 9 (30 aa)
MFLYVVYMEFPYGYLVTTSPQLKTPPWYRQ*

>peptide 10 (83 aa)
MVWIIIRFLWTFPLKKRLYCRVQMVLYNLSAMLSMNPSHGHLTRCLSQLLYRNPRGSWLLLVNRMLCALHNIRSHWIPFAMIL*

>peptide 11 (69 aa)
MDKHNSPMHEAIFFMYLLSMSEQGAGQDTKEQGIPLSSVRGSSGQEAYFDDPTPEDESLVIVSSLKRIV*

>peptide 12 (45 aa)
MTNQYCKNSCISLLFVFCHSIMHIMCPIGLIVGKGFMTMSSEIIK*

Sequence

>CNT30249262
CTACGATCCTTTCAGGTTCGTTTCTGCTCTTGCCGTTCTCATCGTTCCTTTCACGGCTGCGTAGATCTATCATCCATACGGATACCTGTAAGCTGTGCTA
AGGCGAGAGTCAGGAGTTTTGGTCTGCTCTTCGCTACCCCGGCCGCATCCACATCAGGTACCACAGTTTGATGTTCCTCGAAACAGGCATACGCCCAGCT
ATATAAATATAGCAAACAGTTTGATGTTTACTCAGCTAGAATAAACACCAAGGAATTACACAACGGTTTCCTAACCACACTGAACTCCCAATAAATATGA
AGAGCACAAAAAAGTAGTTTCGGCAGGCTTTTCTATCTTTATTATCTTTGCTGCTGTAGACCTAAGCAGCAGTTCATATCTAGCTAGGAAACTCTTCCTC
TGTTAGCCCCGTCTGCAAGTGCTTTTTATTCTTGGAAAAAGTTTATCACGCCGAATCTAGAAATCTAGTCGTAGTACCAAGACATAGAAAAATGAACTGA
AAAACATGCATAGTATATGTTTGTCACAACATACTATCTTTTTAGGAAAAAAACACAACACAAGCACTTGTTCGTTTTCGGGCAATAAGAGAAATACCTA
TGTCTATTCATGGATAAACACAACTCTCCCATGCATGAAGCAATTTTTTTCATGTATCTTTTAAGCATGAGCGAACAAGGAGCGGGTCAAGACACAAAGG
AGCAGGGCATCCCGCTTTCTTCTGTGCGTGGATCATCTGGACAAGAAGCATATTTCGATGATCCAACCCCAGAAGATGAAAGCCTCGTAATTGTGTCTTC
GTTAAAACGTATTGTTTGAATGTTTTTTTGTTTCCCAGTTTCTGAAATAATATTTTTTTCAGATTAACAAGAAAGTGCATCTATTTACATCGACGGATGT
GTCTGATCCCAAAGAAGCTGTTGCTGAGGCAAGGGTTCTCTCGATTACCCCAATAGATGGTGTGGATTATTATAAGGTTTTTGTGGACGTTTCCATTAAA
GAAGAGACTATACTGCCGCGTCCAGATGGTGCTTTACAACTTATCGGCGATGCTGTCAATGAATCCATCGCATGGCCATCTAACCAGGTGTCTCAGTCAA
TTATTATATCGCAACCCACGAGGTAGCTGGCTGTTGCTCGTCAACAGGATGTTGTGTGCACTGCATAACATTCGGTCTCATTGGATACCTTTTGCTATGA
TTTTGTGAACATGATTATGTGGTAATAATTGGTTGTCGCTGATTATGTGGTAATCATTGATCTATCACTGGGTAAACTTTATTAGTATGTGGTATAAGCA
ATCATCTATGATTTTGTAAACTTGATTATGTGGTAATCAGTTGAGAACAGATGACCAATCAGTATTGTAAGAATTCATGCATATCGTTATTGTTCGTTTT
CTGTCATTCAATAATGCATATAATGTGTCCCATCGGATTGATAGTTGGGAAAGGCTTTATGACAATGTCATCAGAAATTATTAAATGAAGAAAAACTCAT
GATGTTTATTTATGTGAAGATTCCACGACAGCTATTAAAAAAAAGGAACTAATATCATAAACCTATTATCATGGAACCTTCACATTACCATGGACTCTGA
GATCTTGGATCTAGTATCAGTGCTATTCTATATTCCTTATATCTTGGAATCAAACAAATTATTTTCGTCCACCAAAATTGTCAGGCGTTAAGGGTGTTTC
CTAAGCCAAGTGGCGATTCCCTTCAAATGAAACCTTTGATCGAGGAACCGGGACGTGTTTAGAGCAAAATGCATGTGCTAAAATTTATAGCAATTACTCC
TTTTTGATAAGGACAGCACATACTCCTAGAAATCGCATTGCAGCAATGGATCCCTGGTACTAGTACTCCTATGATTATTGGTGATGGATTCTTCCATGTA
GTGAGTAGCATTGCAGCAATGCTCGTGCTAAAATTTCAGAGTAGATACTAGTACCCATATGTTCCTGTTCTTATTGATAATATCTGATGATTTACATACG
TGTTGTAAAGTTTGAACATTTTCTTTGTGTTTGTAAAGCACTAAATTAATTCATGTGGTTACTTAGTGGTTTATTTCCTTATGAAAAATGGTTTCTTAGA
TTGATAAAATTAGCTAAACATTTCTACCTTGAGATCTATACTGTTAACTTTGTGCATTTCTACTACATGACTGGAGTGCATCATTGGACATATGTTTCTC
TATGTCGTCTACATGGAGTTCCCCTATGGCTACCTTGTTACGACTTCACCCCAGTTGAAGACCCCACCGTGGTATCGCCAATAAGACCACCAAAGGACTT
TGTGGCACTAGTGGTACATTGAAGTCATGGGTGATTATTGGTCCAATGCTTCGGGCGAAACCAATTCCAGGGTGTGACGGGTGGTGTGTACACGGCCCGG
GTATATATTCACCGTGGCATGCTGATCCGCGAGGCCTACCAGACCGCCGGAGTCCTCTTCGTGGTGCTCCGCGCTGTCAACAAGAATGAGAAGGTTCAAG
AAGTCAACCCAAAGGAGCTTGAAGAAGAACAGTCGGAAGCAGCAGCAGCAGTAAGCATGGCATAGCCCGTGAAGCACTCGTGCGTACCCCAATGGTGATC
TAGGTGAGGAAGTGGTTTGAAGGTGCCACGGAGCGGGTCGCACACGATCAGGAGGCGGCGAACGCGCACCAGAAGGAGACCGTGGCGCGACACTAGCGGC
ACCGCCACGTCTCCCATGCCGGGGACGAAGGAGCTCAGAAGGCG