Detailed information on CNT30249140


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670586Avena sativaSetaria viridis2.142295.4544reverse complement

Expression of CNT30249140

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNTDRKSVVLQCLQHHEGKGAMMTVDETLMCSFHVVKPA*

>peptide 2 (52 aa)
MDVLVIRQKVILDAMLCLNFAESEQLTNYYISELECYANRLFDDEFISNIDE*

>peptide 3 (47 aa)
MRGSGDDHGVRPLVGGGCDKASPRGRRPAGLAMYRMHRAPLYPDLRL*

>peptide 4 (31 aa)
MNDCFTLLTCLFVYTFVTAPVKQELGRNIAV*

>peptide 5 (33 aa)
HILHLPLPSPPPHPLPRTLAATVVFPRSRRVPA*

>peptide 6 (37 aa)
MHRASCGMGAGASLIILAKKHFLSILRYPYVPLARSC*

>peptide 7 (29 aa)
MSTMTMGGSCSSARSWSCSSSAASLLLMH*

>peptide 8 (30 aa)
MRGAGDDHGRPLVGDGCDKASIGLVGRQRW*

>peptide 9 (34 aa)
MHIRKIIRTRHHVYNDNGRILLVSSFMELLLIGC*

>peptide 10 (56 aa)
MPLSSRYRGESWETSTSACNCLSFSSLFFQRLGASADMVSMSKASLNMPQRVFSKS*

>peptide 11 (65 aa)
MQARLSLLYHSIGVILASRNRSTAPRISMSPPPVNLGSHLVKCWLWLVVGSGMQEGRGGDERSRR*

>peptide 12 (31 aa)
MSLSPAPVSFSFLLAASESAGEIKLDDRNSW*

>peptide 13 (32 aa)
MSLCIYLCDCSSQTRARSQHRCVVSKARIQYA*

>peptide 14 (32 aa)
MTIDPCRSDTGAISHHSQLLLEYSIITSTGSI*

Sequence

>CNT30249140
CACATCCTCCACCTCCCATTGCCTAGTCCTCCCCCGCATCCTCTTCCCAGAACCCTAGCCGCCACCGTCGTTTTTCCCAGATCCCGGCGAGTTCCGGCAT
AATCCTCCACCACCAGCTACCAATGCAAGCTCGTCTCTCTCTCCTCTATCATTCCATTGGTGTAATCTTGGCCTCGCGCAACCGCTCCACTGCTCCTCGT
ATCTCTATGTCCCCTCCACCAGTGAATCTGGGGTCTCATCTCGTCAAATGCTGGTTGTGGCTCGTTGTTGGGTCGGGCATGCAGGAAGGCAGAGGTGGGG
ATGAGAGGAGCAGGCGATGACCATGGCAGGCCGCTCGTCGGTGACGGCTGTGACAAGGCCAGCATCGGGCTTGTAGGAAGGCAGCGGTGGTGATGAGAGG
ATCAGGCGATGACCACGGCGTTAGGCCGCTCGTAGGCGGCGGCTGTGACAAGGCCAGCCCGCGAGGGCGTCGTCCTGCAGGGCTCGCGATGTACAGAATG
CATCGAGCTCCCCTCTACCCCGACCTCAGACTCTGAGTGCGCTGGCGGCGGCTGCCTCGTATGCACAGGGCAAGTTGTGGCATGGGCGCTGGAGCCAGCC
TAATCATCCTCGCCAAGAAGCACTTCCTCTCCATACTCAGGTACCCCTATGTCCCTCTCGCCCGCTCCTGTTAGTTTTAGTTTTTTACTGGCTGCCTCTG
AATCTGCTGGAGAAATCAAGCTGGATGACCGGAACAGTTGGTAGCATATTCTTGTTGATTGACTCAGATGATTATTGGGTGGATGATATATGCATATAAG
AAAGATAATCCGGACTAGGCATCATGTCTACAATGACAATGGGAGGATCTTGCTCGTCAGCTCGTTCATGGAGTTGCTCCTCATCGGCTGCTAGCCTGCT
ACTCATGCATTGACTAGACTGATGGTTGGGGATGAACTTGATAGACACAAGCCAGCTGCACGAAGATGCCCTTGAGCTCCAGATACAGAGGTGAAAGTTG
GGAAACTAGCACTAGCGCATGCAATTGCTTGAGCTTTAGCTCTTTATTTTTCCAGAGGTTGGGTGCCTCAGCGGATATGGTTTCTATGAGCAAAGCATCC
TTGAATATGCCACAACGGGTTTTCTCTAAATCATGAACACAGATAGAAAATCAGTTGTTTTGCAGTGTCTACAACATCATGAGGGAAAAGGTGCCATGAT
GACTGTAGATGAGACACTGATGTGCTCCTTCCATGTAGTCAAACCTGCATGAGGAATTCTAGGTGGTTCGACTAATATCAAATCTGGCTTCAACGTATGC
ATGGCTAATGCAGGAAAGAATTAATCTTACAAATATGTGGTTTAGCTCCCTGGCTCATGGATCATGACGATTGATCCTTGTCGTTCTGATACTGGAGCAA
TTTCTCATCATTCTCAATTATTACTGGAGTACTCTATTATTACGTCCACCGGGTCCATTTGACATTATTGTGAACTGTCTTGATGCGACCATCTGAAGGT
GCATATCATGGATGTTCTTGTAATTCGACAGAAGGTTATACTTGATGCCATGCTATGTCTGAACTTTGCTGAATCTGAACAACTGACCAATTACTATATA
TCAGAGCTAGAGTGTTATGCAAATCGCTTGTTTGATGACGAGTTCATTTCCAACATAGATGAATGATTGCTTTACACTACTTACATGTCTCTTTGTATAT
ACCTTTGTGACTGCTCCAGTCAAACAAGAGCTAGGTCGCAACATCGCTGTGTAGTTTCTAAGGCACGAATACAATATGCCTAACGTTGTTTCAGACTATA
GGCAAAATACCTGAAAATAATTGTGAATTTTGTTTTGCTGACTTTCTTATTTTTCCTATACAAGTTGTTCATGTATGTCTAGCTTCAATCACCCGTTAAT
AACACTTTCAGAGTCATGGACAACCAGAATCCGATGGAGATAAACATGTTAAGTAGTGTAAACATGGACAGACATCTATAGTTCTGTGTTGTATATTCCA
TCCTAGCTTTTATGTCAACAATGTCCATTAATACATGTGTATGAACACTTGCT