Detailed information on CNT30249136


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 2e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639966Avena sativaNymphaea colorata26.678.7984.85132forward
CNT30129085Avena sativaCorymbia citriodora32.7315.3885.8162forward
CNT30720963Avena sativaTriticum spelta57.9851.5391.29287forward
CNT3037832Avena sativaCucumis melo24.0414.1381.51119forward

Expression of CNT30249136

Peptides detected in this lncRNA

>peptide 1 (72 aa)
GKIHLHVHRLKQASTAMHVLYMVRVLLEEVWEVEDVEEEVGPDGARDAAEEEPSAMARWRARRPRRRRRRTW*

>peptide 2 (90 aa)
MGGRGRRGGSRPRRRQRRRRRRTLRDGAVEGAPSSKEATPYMVRTTLRMVTRPMAPRAPAWPCTGVLRSGPVSAKGPTSMPRSSGLTAVR*

Sequence

>CNT30249136
CGGAAAGATTCATTTACACGTACATAGGCTCAAGCAAGCATCTACAGCCATGCATGTACTGTACATGGTAAGAGTTCTACTTGAAGAAGTATGGGAGGTC
GAGGACGTAGAGGAGGAAGTAGGCCCAGACGGCGCCAGAGACGCCGCCGAAGAAGAACCCTCCGCGATGGCGCGGTGGAGGGCGCGCCGTCCTCGAAGGA
GGCGACGCCGTACATGGTGAGGACTACGCTGAGGATGGTGACGAGGCCGATGGCGCCGAGAGCGCCGGCCTGGCCGTGCACGGGGGTGTTGCGGAGCGGG
CCGGTGAGCGCGAAGGGGCCGACCTCGATGCCGCGGAGCAGCGGGCTGACGGCGGTGCGGTAGGCGGGGAGGTTGGAGAGGTACCATGCGACGAGCGGGC
TGGAGGTGACGGGCGTCTCCAGGCTGCCGATGAAGGGGTCGCCATTGATGGGCTGCACCACCTGGTAGTTTGGCTGCAGCACGGACAGAGTCGAC