Detailed information on CNT30249006


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10M12|40C1_ORYSJ, E-value = 3e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Avena sativaOryza sativa26.947.3791.88234forward
CNT30522081Avena sativaSetaria italica26.940.4191.88234forward
CNT30392320Avena sativaTriticum turgidum22.39792.27194forward
CNT30439818Avena sativaAegilops tauschii24.2570.5791.94211forward
CNT30444735Avena sativaSaccharum spontaneum27.0141.1692.34235forward
CNT30721558Avena sativaTriticum spelta25.6399.5591.93223forward
CNT30341886Avena sativaEragrostis tef22.8773.4387.94199forward
CNT30593977Avena sativaEragrostis curvula25.1798.6589.5219forward

Expression of CNT30249006

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVASEVRCYSSSDTYTRGGSSSAGCRPRTTSRARGRCRRARRRGPCRR*

>peptide 2 (35 aa)
GKGAAGCKRNDKSLVIDMSRCKISSVDVDDKRPFA*

>peptide 3 (34 aa)
MLFTMRMQRKPLPTSRLSVHITDSSRYSGLYGTSF

>peptide 4 (85 aa)
MLKSDSSPKTQNSPLISLTEAGLDDSTGTKTQNTRTRHHHRRPQRTFYSSDTAANHTLISLPTPGHGGDECSSSGMTRFCKHKQQ*

Sequence

>CNT30249006
GGCAAAGGCGCAGCAGGATGTAAACGCAATGACAAATCATTAGTAATCGACATGTCAAGGTGCAAGATCAGTAGCGTAGATGTGGACGATAAAAGACCAT
TCGCATAGATGAAACGATGGCACCACACCACAGTACATATGTTCTCATAATGGATCGAAGGTCTGAGAAACAAGCACAAGTGCCAAATGCTTAAATCAGA
TAGCTCACCAAAGACACAGAACTCCCCTCTCATTTCGCTCACGGAAGCAGGACTCGACGACAGTACTGGAACTAAAACACAAAACACACGAACACGTCAC
CACCACCGACGACCCCAAAGGACCTTTTATTCTAGCGACACGGCAGCAAATCACACGCTGATCTCTCTACCAACTCCGGGTCACGGTGGCGATGAATGCA
GCTCCAGCGGCATGACACGTTTCTGCAAACACAAGCAACAATAAAGCACATTAATATAATTTCTTAAGGGAACGCAAAGTAGTTCAAGATATGGCAGTGG
CAGATGAGCCATCAGTTTCTACGAGCTTCTACAGTTTCTTTTTATGACGATGCTGTTGAAGAAAAGGTGTGCAAACTTTTCCAATAGTAAACGATAATGG
TAGCTAGCGAGGTGCGCTGCTACTCAAGTAGTGACACTTACACCAGGGGAGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCGCGAGG
ACGGTGCCGTCGCGCACGCCGCCGTGGTCCTTGTCGCCGTTGAGGGCGTCGAAGTTGAGGCGGATGTTGTTCACCATGCGGATGCAGCGGAAACCCTTGC
CGACGTCGCGGCTCTCCGTCCACATCACAGACTCGTCGAGGTATTCTGGGTTGTACGGCACCAGCTTCAC