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Detailed information on CNT30248974


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3080945Avena sativaBrassica juncea10.3640.1891.1190reverse complement

Expression of CNT30248974

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLQPRIVGNEHYETAQRVKCRPSHRKRAQTNYIVSTFLSFFLCLYSCYGLAFNV*

>peptide 2 (29 aa)
MLNVQTHVSRFVFQNGFIALLYKYSKALNL

>peptide 3 (50 aa)
MNRNNMAFRTILVVVCVIFASLVFIAQDTVAARDLAQTQGGNAGGGSQLR*

>peptide 4 (52 aa)
MKLRKELNAALVTVKELRQIILSLLFYHFSCVYIPVMALLLMFSLNLTCIQD*

Sequence

>CNT30248974
AAATATGCAAGTGTAGGCACCCCTGTTCTCGTACTCGGGAGGACGTACAAGGAAGATGAATCGCAATAATATGGCATTCAGAACCATCCTAGTTGTGGTG
TGCGTCATCTTCGCCTCTCTCGTGTTCATCGCGCAGGATACGGTCGCCGCTAGAGATCTCGCTCAAACCCAAGGCGGCAACGCCGGCGGCGGTTCACAAC
TGAGATGATCGTGTGTAGGATCGGGATGATCCGGTGGAGGATGGATGATGAGGTTGAACGGGTGTAGGATCGAGTTAATGTGCACCCAAAACTGAACTAG
AGGCCACTTCTAATAAAATTGTTCTTTGATAGATCTTGATCAAATTTGTTAATTGACGGTTAGAAAAAATCAGAGCCAAGGGCACCGAACAACACAAAGG
GGAAGGATTTTTCTCGTTCGAGAGTCTCCACCCTTCTTCCACTCTCCCTTGGGATCCACCACAGGTTGGGTTTGAGAGCCGTGTGATGAGTGACTTCTAA
ATCCAAGGCTTGACATCCATTGTGGGGTATTTATCCAGCAGTAGATCCTTTAGACTCAACCTCAACTATGTTACAGCCTCGAATCGTTGGCAACGAACAT
TATGAAACTGCGCAAAGAGTTAAATGCCGCCCTAGTCACCGTAAAAGAGCTCAGACAAATTATATTGTCTCTACTTTTTTATCATTTTTCTTGTGTCTAT
ATTCCTGTTATGGCCTTGCTTTTAATGTTTAGTTTAAACTTGACCTGCATACAAGACTGACTTAACCTGCATACGATCATGTTGAATGTACAAACTCACG
TCTCCAGGTTTGTATTTCAAAACGGTTTTATCGCTCTTTTATATAAATATTCTAAAGCTTTGAATTTGG