CANTATAdb - search

Detailed information on CNT30248579

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 6e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30106627	Avena sativa	Oryza longistaminata	34.02	98.03	91.96	199	forward
CNT30148227	Avena sativa	Brachypodium distachyon	29.23	67.86	93.57	171	forward

Expression of CNT30248579

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAGSASAGCRPRTTSRARPRCRRGRRRGTCRR*

>peptide 2 (58 aa)
LLILISDITLYIFNQVRAQQLMHTSHIHELFHMISGFYSRMRSERWSCLSRTVNVALQ*

>peptide 3 (77 aa)
MLFTMRTQRKPLPTSRLSVHSTDSSWYAGLYGTSFTGCPCPVECLMHSPVTLFTIANAGYPSSSLILLPCLMSLIQCC

Sequence

>CNT30248579
TTTTATTGATACTAATATCTGATATCACACTTTATATATTCAATCAGGTACGAGCACAACAGCTTATGCATACATCCCATATACACGAGCTCTTTCATAT
GATCTCCGGCTTTTATTCTAGGATGCGTAGCGAGAGATGGAGTTGTCTATCCAGGACAGTGAACGTCGCTCTTCAGTAGATATGGATGTACCAGTTGGGT
ATGATGGCTGGCTGGCTTAGGACTCAGTAGTATGGCTGGATCTGCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCGC
GGACGCCGCCGTGGTACTTGTCGCCGTTGAGGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGCACGCAGCGGAAGCCCTTGCCCACGTCGCGGCT
CTCCGTCCACAGCACCGACTCGTCCTGGTACGCCGGGTTGTACGGCACCAGCTTCACCGGGTGCCCCTGCCCGGTCGAGTGCTTGATGCACTCGCCGGTC
ACCTTGTTCACGATCGCGAACGCGGGGTACCCTTCCTCGTCCCTGATCTTGTTGCCGTGCCTCATGTCCTTGATCCAGTGCTGCA