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Detailed information on CNT3024855


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 3e-48

BLAST vs NONCODE:
NONGMAT000508, E-value = 3e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677865Populus trichocarpaSetaria viridis18.5725.2985.32109forward
CNT30523218Populus trichocarpaSetaria italica43.9547.2579.46258forward
CNT30317753Populus trichocarpaCorylus avellana52.9844.6879.42311forward
CNT30546681Populus trichocarpaIpomoea triloba50.7763.482.55298forward
CNT30701199Populus trichocarpaQuercus lobata53.4928.4983.44314forward
CNT30375418Populus trichocarpaArabidopsis thaliana17.7244.0784.62104forward
CNT30616210Populus trichocarpaSesamum indicum46.5121.8280.59273forward
CNT3069058Populus trichocarpaQuercus suber28.9619.4385.29170forward
CNT30195393Populus trichocarpaPisum sativum46.3442.2483.46272forward
CNT30712284Populus trichocarpaGlycine max19.2524.0484.96113forward
CNT3042757Populus trichocarpaPrunus dulcis52.9851.3279.74311forward
CNT3092650Populus trichocarpaSolanum tuberosum17.2126.385.15101forward
CNT30178595Populus trichocarpaSecale cereale44.4643.7980.08261forward
CNT30284518Populus trichocarpaTriticum aestivum43.9541.4180.23258forward
CNT30219776Populus trichocarpaHordeum vulgare18.2325.4284.11107forward
CNT30383650Populus trichocarpaTriticum turgidum44.4627.0580.84261forward
CNT30565712Populus trichocarpaActinidia chinensis26.4151.8481.94155forward
CNT3086283Populus trichocarpaVigna radiata53.3221.0683.39313forward
CNT30172567Populus trichocarpaTrifolium pratense50.7743.781.88298forward
CNT30434720Populus trichocarpaAegilops tauschii44.4650.7880.08261forward
CNT30255921Populus trichocarpaAvena sativa41.2343.0681.82242forward
CNT30655816Populus trichocarpaTriticum dicoccoides41.2338.0580.99242forward
CNT3059678Populus trichocarpaArabidopsis lyrata21.9826.8282.95129forward
CNT3082467Populus trichocarpaBrassica juncea52.9843.3880.39311forward
CNT30611328Populus trichocarpaArabis alpina20.2726.182.35119forward
CNT30135649Populus trichocarpaLolium perenne43.7850.179.38257forward
CNT304209Populus trichocarpaZea mays30.4930.7680.45179forward
CNT30211420Populus trichocarpaHelianthus annuus50.4359.6881.08296forward
CNT30687044Populus trichocarpaTriticum urartu4626.580270forward
CNT30619612Populus trichocarpaCajanus cajan28.4539.8682.04167forward
CNT30360323Populus trichocarpaLactuca sativa40.267.4385.59236forward
CNT30414711Populus trichocarpaPapaver somniferum38.3323.5482.22225forward
CNT30645276Populus trichocarpaCannabis sativa40.7244.2680.33239forward
CNT3052246Populus trichocarpaAmborella trichopoda45.8322.3281.78269forward
CNT30326571Populus trichocarpaAsparagus officinalis51.6249.6779.87303forward
CNT30331117Populus trichocarpaDioscorea rotundata53.3233.0584.03313forward
CNT30147953Populus trichocarpaBrachypodium distachyon21.4714.583.33126forward
CNT30101647Populus trichocarpaOryza rufipogon41.2325.9779.75242forward
CNT30496126Populus trichocarpaDigitaria exilis2319.8582.22135forward
CNT3050826Populus trichocarpaCucumis sativus23.1739.8881.62136forward

Expression of CNT3024855

Peptides detected in this lncRNA

>peptide 1 (41 aa)
TSPSKVEFETEPFPFQKLKKKNSTLTHHALILTKQYLKKPD*

>peptide 2 (90 aa)
MLSVGHGISDNILQEDLEHTTSLFIDQATDTLDPTPPSKTADCRLCDTLNVITKDLAMTLGSSLSQALASLSTSRHVYLADEKICGKDST*

Sequence

>CNT3024855
ACGAGCCCATCAAAAGTTGAATTCGAAACAGAACCATTTCCATTCCAAAAATTAAAAAAAAAAAATTCAACATTAACCCATCACGCACTTATACTTACAA
AACAGTACCTAAAAAAACCTGATTAGCAAATCTAAACCCGATCCCTCAAAAGCCCTTTTCTTGACAGCAAGACTTTTATTTTAAAATTAAAAGCCCTAAC
CACCGAACCCATACAGAGTCCTTCCCTGCCTCTTGAGGGCATACACCACATCCATGGCAGTAACGGTCTTGCGGCGAGCATGCTCAGTGTAGGTCACGGC
ATCTCTGATAACATTCTCCAGGAAGATCTTGAGCACACCACGAGTCTCTTCATAGATCAAGCCACTGATACGCTTGACCCCACCCCTCCGAGCAAGACGG
CGGATTGCAGGCTTTGTGATACCTTGAATGTTATCACGAAGGACCTTGCGATGACGCTTGGCTCCTCCCTTTCCCAGGCCCTTGCCTCCCTTTCCACGTC
CAGACATGTTTATCTAGCTGATGAGAAGATCTGTGGAAAAGATTCGACATGAGAATCGTTACCACATGATAGCGATTCATATAAAAA