Detailed information on CNT30248540


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN1|NHL2_ARATH, E-value = 2e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672898Avena sativaSetaria viridis26.533090.38156forward
CNT30464486Avena sativaSaccharum spontaneum26.1920.9588.31154forward
CNT30101505Avena sativaOryza rufipogon57.8229.8884.71340forward
CNT30576205Avena sativaOryza barthii30.9518.4288.46182forward
CNT30116451Avena sativaOryza nivara57.3130.6485.46337forward

Expression of CNT30248540

Peptides detected in this lncRNA

>peptide 1 (75 aa)
AAPGAGRLSGQLILALGPATLKAQTLTLSLALSLTSTSNAPPDCCPRKSLAVASPSSSCWPPKTGESCVEASVGW*

>peptide 2 (65 aa)
CGSRGGEAERAADPGPGPGDLEGPDLDPELGVELDLDIERATRLLSPEVARGGVALEQLLAAEDG*

>peptide 3 (50 aa)
MPATTRTVTRMLQRQLKSPHARHLNGQHRHDAHRLAEPIGEEALARLGAG*

Sequence

>CNT30248540
TGCGGCTCCAGGGGCGGGGAGGCTGAGCGGGCAGCTGATCCTGGCCCTGGGCCCGGCGACCTTGAAGGCCCAGACCTTGACCCTGAGCTTGGCGTTGAGC
TTGACCTCGACATCGAACGCGCCACCAGACTGCTGTCCCCGGAAGTCGCTCGCGGTGGCGTCGCCCTCGAGCAGCTGCTGGCCGCCGAAGACGGGTGAGA
GCTGCGTGGAGGCCTCGGTGGGCTGGTAGAAGGCGTCGAGGGGCGCGTACCCGAAGCGCTGGTCCTCGTACAGGGCCAGGGCCTCGACGGAGTCGTAGTA
GAGGCCCACGCGCTTGTTGGGGTTGCGGACGGTCATGGCGACGGTGAGGTTGTAGGTGAGGGCGGAGTCGACGGTGGCGGCGATCATGTGCGGGCGGAAG
ATGAAGTAGAGGACGAGGGCGAGGATGCCGGCGACGACGAGGACTGTGACGAGGATGCTGCAGAGGCAGCTGAAGAGCCCGCACGCCAGGCACTTGAACG
GGCAGCACAGGCACGACGCGCACCGGCTCGCTGAACCCATCGGAGAGGAGGCTCTTGCTAGGTTGGGCGCTGGATGACGGGGTGACGG