CANTATAdb - search

Detailed information on CNT30248526

BLAST search results

BLAST vs Swiss-Prot:
sp|P01053|ICI2_HORVU, E-value = 2e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30384527	Avena sativa	Triticum turgidum	11.94	29.66	85.9	78	reverse complement

Expression of CNT30248526

Peptides detected in this lncRNA

>peptide 1 (49 aa)
FDLIASTLYKIRHPTDAALYKPHHCGKTLALDQHRPSQLIRDKQLIRTA*

>peptide 2 (72 aa)
MSSSDEVACGEKTSWPELVGKSIEEAKKTILKDRPDVKTVEVFPVGAKVTEDFRLDRVRIFVDTVAEIPRIG*

Sequence

>CNT30248526
GTTTGACCTGATCGCATCCACTCTCTATAAAATACGGCACCCTACTGATGCCGCCTTGTACAAACCACACCACTGCGGGAAAACCTTGGCTCTAGATCAG
CATCGTCCTTCTCAGTTGATCAGAGACAAGCAGCTCATTCGAACAGCATGAGCTCCTCGGACGAAGTCGCCTGCGGCGAGAAGACGTCGTGGCCGGAGCT
GGTTGGGAAATCCATCGAGGAGGCCAAGAAGACCATCCTCAAGGACAGGCCGGACGTGAAGACGGTCGAGGTCTTCCCAGTGGGCGCCAAGGTGACCGAG
GACTTCAGACTTGACCGTGTCCGTATCTTCGTCGACACCGTCGCCGAGATCCCCCGCATCGGTTAGGGTTTGCCTCATGGTGCAGTATTCTCTCTTGGAC
GAAGAATAAATAAACGAGGAACGAAGAACTGTATAACTTCGTCCCTCGAGGAGTTAATATGCCGGTATAATAATTCTGTCAATAAACCAAAGATAGCCAG
TGAACCCTGTGCTATTTGTGGATCGCCGTATAATGGTTTTGCAAAATTACTGGTTGCACCTTTTGCAATTGTTTTGTTAACCATAGATAGCTAGTGACTT
TGTGCATGCATCATGCTCTTGGCTATTATTGGTTGCATCTTTGGTTAACGACT