Detailed information on CNT30248419


BLAST search results

BLAST vs Swiss-Prot:
sp|O23254|GLYC4_ARATH, E-value = 6e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677187Avena sativaSetaria viridis13.2520.7691.6760forward
CNT30524209Avena sativaSetaria italica39.749.790180forward
CNT30709157Avena sativaGlycine max29.821.3986.67135forward
CNT30650801Avena sativaRosa chinensis38.6313.3282.29175forward
CNT30714749Avena sativaMalus domestica golden42.3882.7680.73192forward
CNT30365509Avena sativaSorghum bicolor49.6732.9486.22225forward
CNT30620724Avena sativaCajanus cajan38.6327.2682.29175forward
CNT30117918Avena sativaOryza nivara27.3713.7988.71124forward

Expression of CNT30248419

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MSTGGEVEPHDPVVRVEERGVRGEVSGRARVRLHVDAPCGTVEAERHERAVAAEVLDLVDDVEHIWVGVGKRGQAP*

>peptide 2 (84 aa)
MIRSCGLRSAVYAAKLAGEPEYGCTLTPHAALSRRNATSARSRQRFSISSMTSNTSGSASASGVRPHEATESIAAGKETDKAATE

Sequence

>CNT30248419
CCTGCGCAGCGACTAGGCCGCTGATGTGCGCCATGTCACAGAGGAGCATGGCCCCGACCTTGTCTGCGACAGCCCTGAGCCTCGCGTAGTCCCAATCCCT
GGGCTCTCGAAGTAGATCGACGTAGCAGATATCTTTTTTCCGCCCGCGGTGTAGTACCCGTGGGTTAGATGTCCACCGGAGGGGAGGTCGAGCCCCATGA
TCCGGTCGTGCGGGTTGAGGAGCGCGGTGTACGCGGCGAAGTTAGCGGGCGAGCCCGAGTACGGCTGCACGTTGACGCCCCATGCGGCACTGTCGAGGCG
GAACGCCACGAGCGCGCGGTCGCGGCAGAGGTTCTCGATCTCGTCGATGACGTCGAACACATCTGGGTCGGCGTCGGCAAGCGGGGTCAGGCCCCATGAG
GCAACGGAATCCATCGCCGCGGGGAAGGAGACGGACAAGGCGGCAACGGAACG