Detailed information on CNT30248284


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 2e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287468Avena sativaTriticum aestivum5188.6691.64383forward
CNT30386302Avena sativaTriticum turgidum5149.6191.38383forward
CNT30555612Avena sativaOryza glaberrima49.835.7987.17374forward
CNT30436411Avena sativaAegilops tauschii5158.1292.17383forward
CNT30658347Avena sativaTriticum dicoccoides5170.9391.91383forward
CNT30681645Avena sativaTriticum urartu5126.1891.91383forward
CNT30597241Avena sativaOryza meridionalis40.7535.1384.97306forward
CNT30371468Avena sativaOryza glumipatula33.5621.8985.71252forward
CNT30104669Avena sativaOryza rufipogon49.2744.6386.49370forward
CNT30578612Avena sativaOryza barthii40.7527.0686.6306forward
CNT30118025Avena sativaOryza nivara39.9525.9385.67300forward

Expression of CNT30248284

Peptides detected in this lncRNA

>peptide 1 (33 aa)
TEKYPYTCIAYLCIYIQIPNNINNKQIESLAKI*

>peptide 2 (30 aa)
MYIYPDSKQHQQQTDRIPRKNLKPHLRCRV*

>peptide 3 (33 aa)
MKPTLLNSRQGTHLERIKKSICFRRASSESGGK*

Sequence

>CNT30248284
ATACTGAAAAATATCCTTACACTTGCATCGCATATCTATGTATATATATCCAGATTCCAAACAACATCAACAACAAACAGATAGAATCCCTCGCAAAAAT
CTGAAACCTCATTTGCGTTGCCGGGTTTAATCAATGAAGACAATCTAAGAAGGAACAGACTTAACCAAGCGTGCGATTGTTCATTGACCAATATTATGGA
ACCAGAAGTAAAACCTCAAAATCAGAATTTTTGACAAATTTGAACAAGACAGTTCATATAGCATCTGTTATTCCCGGGTCGCAGCTTATGCCTTGCCGGA
CTCCTCGCAGCCCGGTGGCTTGAATGCGATGAAGCTGACGCACTGCACTTGGCGGATGTTGTCGAAGCCGATGATGCGGACATAGGCGTCAGGGTACTCC
TTCTTGACCTCCTCCACCTCCTTGATCACCTGTGAGGCGTCGGTGCAGCCGAACATGGGCAGCTTCCACATTGTCCAGTACCTGCCGTCGTAGTATCCGG
GGGTGCTGCCGTGCTCGCGGAAGATGAAGCCAACCTTGCTGAACTCGAGGCAGGGAACCCACTTGGAGCGGATCAAGAAGTCGATCTGCTTCAGGAGGGC
CTCCTCTGAGAGTGGTGGCAAGTAAGAAAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATTGTTGACAGAATACCCACATACATATAT
ATCACTTGGTGCTCAGCTCAATACTTGTTCCCAAGTGAAATGGACCTTCAA