CANTATAdb - search

Detailed information on CNT30248270

BLAST search results

BLAST vs Swiss-Prot:
sp|P00228|FER_WHEAT, E-value = 4e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675687	Avena sativa	Setaria viridis	32.57	34.44	87.34	229	forward
CNT30366842	Avena sativa	Sorghum bicolor	36.7	30.86	85.66	258	forward
CNT30596694	Avena sativa	Oryza meridionalis	20.2	16.88	87.32	142	forward

Expression of CNT30248270

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTRSDWGKLWSDWSTVPETTLPAQEEQEPARQEYGRSMPSSSAWSRM*

>peptide 2 (44 aa)
MQYNRLLLLLGLRKRTILKIKHPKPTTSPQQALTIVRTNYSSEL*

Sequence

>CNT30248270
GTTGTCTTAACGGCCTTACGAGTAAGCACAGCTCGGAAAAAATAATGCATGAATAATGCAGTACAATCGTCTACTTTTATTACTTGGCTTGAGAAAACGA
ACAATACTCAAAATTAAGCACCCAAAACCAACCACAAGTCCACAACAAGCACTAACAATTGTACGTACTAATTACTCCTCAGAACTCTGAATTCCTGACA
CGGTTCATGCAAGCACGCGCAGGCGCCGGAAATCGATCGAAATGGATAATCAGTTAATTTAGGCGGTGAGCTCGTCCTCCTTGTGGGTCTCGATGACGAG
GTCGGACTGGGGGAAGCTCTGGTCGGACTGGTCCACCGTGCCGGAGACCACCTTGCCGGCGCAGGAGGAGCAGGAGCCGGCGCGGCAGGAGTACGGCAGG
TCGATGCCTTCCTCCTCGGCGTGGTCGAGGATGTAGACGTCGTCGGGGACCTCAAGGTCCACCTCCCCCTCCGGCGTGATTAGCTTCACCTTGTACGTCG
CCTGCGCCCGGAGCCTCATCCCCCTGGCGGCCGTCGTCGACGAGAGCGGCAGCGCGACTCTGGTGGCGGCAGGCGCCGAGGGAGCGGCGGGGCAGAGGGA
GAAGGGCGCGCGGAGGCTGCTCATGAGTGCGGTGGCCATTGCGGCGGAGGTGACTCTGTGCGCTGGTTTGCTAGGTGGATAGATAGCTGGAGGGACAGGA
TAG