CANTATAdb - search

Detailed information on CNT30248159

BLAST search results

BLAST vs Swiss-Prot:
sp|Q40034|EF1A2_HORVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30564257	Avena sativa	Actinidia chinensis	49.22	47.03	85.9	539	forward
CNT30146188	Avena sativa	Medicago truncatula	24.29	33.89	89.1	266	forward
CNT30440878	Avena sativa	Aegilops tauschii	23.47	32.7	92.61	257	forward
CNT3077042	Avena sativa	Brassica juncea	74.25	67.52	85.98	813	forward
CNT30132437	Avena sativa	Lolium perenne	101.19	92.18	89.98	1108	forward
CNT30721805	Avena sativa	Triticum spelta	21.37	16.2	90.17	234	forward
CNT3024873	Avena sativa	Populus trichocarpa	31.05	60.28	87.35	340	forward
CNT3050294	Avena sativa	Cucumis sativus	43.47	77.65	84.03	476	forward

Expression of CNT30248159

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSRTAKRPRGGYWEKVSTTMGLVGIIFTKPASPFLRNLGKASISLPERLSTLVWISENLTAMWDVWQSSTGA*

>peptide 2 (93 aa)
MMMTWATKLAASLAGSSLALEATYPRLISFTATFFTLKPTLSPGTASSMDSWCISTDFTSVVSPVGPKVTSIPGLITPVSTRPTGTVPMPPIL*

Sequence

>CNT30248159
ATATGACTCGAAATTTCTGACGTATATATAGAGAGTAGCAACAATAATGGAACACAGCAGGACATTGTTTCACCAACATAACCGAAAGATAGAATGATAA
GCAGCACGAAGGCTGGACGACGCACATAACCGAACTCCAGAGAACGGGCAAGTTCCCAGATTCACTAACACGACTACCATCGCCATATACCACCACTACG
GTTGTAGTAGTGGACAACCACCGGGCACCATCTCATTTCTTCTTGGCGGCAGCCTTGGTCACCTTGGCGCCAGTGGGGTCCTTCTCCACGCTCTTGATCA
CACCGACGGCAACGGTCTGCCTCATGTCACGCACGGCAAAGCGGCCAAGGGGAGGGTACTGGGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAATCAT
CTTCACGAAGCCAGCGTCACCGTTCTTGAGGAACTTGGGGAAGGCCTCAATCTCCTTGCCAGAACGCCTGTCAACCTTGGTCTGGATCTCAGAGAACTTG
ACAGCAATGTGGGACGTGTGGCAGTCCAGCACTGGGGCATAGCCGTTGCCGATCTGGCCAGGGTGGTTCATGATGATGACCTGGGCAACGAAGTTGGCAG
CCTCCTTGGCAGGGTCGTCCTTGGCATTGGAGGCGACATACCCACGCTTGATATCCTTCACAGCAACGTTCTTCACGTTGAAGCCAACGTTGTCACCTGG
CACAGCCTCCAGCATGGACTCGTGGTGCATCTCCACAGACTTCACCTCAGTCGTCAGCCCAGTTGGGCCAAAGGTGACAAGCATACCAGGCTTGATCACT
CCAGTCTCAACACGCCCCACTGGCACAGTTCCAATGCCACCAATCTTGTAGACATCCTGAAGGGGAAGGCGGAGGGGCTTGTCTGAGGGTCTCTTGGGCT
CGTTGATCTGGTCAAGCGCCTCAAGAAGGGTGGGGCCCTTGTACCAGTCAAGGTTGCTGGACCTCTCAATCATGTTGTCACCCTCAAATCCAGAGATGGG
GACAAATGGGACCTTGTCAGGGTTGTAGCCCACCTTCTTCAAGTAGGAGCCAACTTCCTTGACAATTTCCTCAAAACGGCCCTTGGAGTACTTGG