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Detailed information on CNT30248128


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694984Avena sativaOryza sativa28.0820.8182.01189reverse complement
CNT30677326Avena sativaSetaria viridis17.094690.43115reverse complement
CNT30524597Avena sativaSetaria italica9.9626.2792.5467reverse complement

Expression of CNT30248128

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MHVCMCVRPQVYLVVLVPCNKAIDNVHGYMCHVRSYIVNRTLLLLYV

>peptide 2 (40 aa)
MLPLLLKCMLFRRICCTASSYGRVMLMFPFNKLSSVWVNL*

>peptide 3 (75 aa)
MEGKRTTSLMVIMSLLILSLTINSATADCGCCSAARAKACCFGCIAVGGTDTICKNTCCFPCFLDRSGVPNMEEV*

>peptide 4 (30 aa)
TTQHKPKKHSYITKVGSARRRQWRARGLLV*

Sequence

>CNT30248128
ACCACACAACACAAACCTAAGAAACATAGCTACATAACCAAGGTAGGCAGCGCTAGAAGGAGGCAATGGAGGGCAAGAGGACTACTAGTTTGATGGTGAT
CATGTCCCTGCTCATCTTGAGCCTGACCATCAACTCAGCCACGGCAGATTGCGGCTGTTGCTCAGCCGCCCGGGCAAAAGCATGCTGTTTTGGTTGTATT
GCAGTGGGTGGCACGGACACAATCTGCAAGAACACTTGCTGTTTTCCCTGTTTTCTTGACCGTTCCGGGGTTCCTAATATGGAAGAAGTCTAAGATGCAA
GAAATAGGATTGGATGCTAAGATGAAAAAAATGGAATTTCTTGCTAAGATGGAAGCGAAGGACTGAAGTGATATGCTTCCATTACTACTAAAATGTATGC
TATTCAGACGCATATGTTGCACTGCATCAAGCTATGGCCGAGTTATGTTAATGTTTCCCTTTAATAAATTGTCGTCCGTATGGGTAAATCTCTAGTCGAT
TCATATGTTGGCCTTGACTAGATATATGACATGCATGTGTGCATGTGTGTGCGCCCACAAGTCTATTTAGTTGTTCTTGTTCCATGTAATAAGGCCATAG
ACAATGTCCACGGGTATATGTGCCATGTACGTTCTTATATAGTTAACAGAACTCTATTATTATTATATGTCTA