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Detailed information on CNT30248040

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697843	Avena sativa	Oryza sativa	57.95	24.9	98.46	780	forward
CNT30524653	Avena sativa	Setaria italica	37.52	42.15	98.61	505	reverse complement
CNT30378671	Avena sativa	Arabidopsis thaliana	11.22	53.55	98.01	151	forward
CNT30504983	Avena sativa	Nicotiana attenuata	28.31	20.92	99.21	381	reverse complement
CNT30309155	Avena sativa	Triticum aestivum	57.95	35.18	98.59	780	forward
CNT30221494	Avena sativa	Hordeum vulgare	56.46	61.19	98.55	760	reverse complement
CNT30400948	Avena sativa	Triticum turgidum	57.95	31.2	98.85	780	forward
CNT30234810	Avena sativa	Brassica oleracea	41.9	74.5	93.97	564	forward
CNT30554921	Avena sativa	Oryza glaberrima	10.03	38.24	99.26	135	reverse complement
CNT30662061	Avena sativa	Triticum dicoccoides	57.95	40.65	98.72	780	forward
CNT30143344	Avena sativa	Lolium perenne	57.95	34.87	98.97	780	forward
CNT3016633	Avena sativa	Zea mays	57.95	40.82	97.82	780	forward
CNT30721611	Avena sativa	Triticum spelta	16.64	48.59	99.55	224	forward
CNT30154718	Avena sativa	Prunus persica	35.22	68.4	93.46	474	reverse complement
CNT30420891	Avena sativa	Papaver somniferum	41.16	20.63	91.34	554	forward
CNT3037914	Avena sativa	Cucumis melo	30.76	19.45	89.37	414	reverse complement
CNT30147862	Avena sativa	Brachypodium distachyon	10.7	54.75	100	144	forward
CNT30582488	Avena sativa	Echinochloa crusgalli	57.95	64.25	98.97	780	reverse complement
CNT30116696	Avena sativa	Oryza nivara	57.95	19.67	98.59	780	forward

Expression of CNT30248040

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

>peptide 2 (66 aa)
MLHRLCRPPSIPLSFGLAIALPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLILFAPHAFAPQHR*

>peptide 3 (41 aa)
MLSHPSIGRGPRELPSLLAFLRRSTDFTPTHEIPLSSVSLK*

Sequence

>CNT30248040
GAGGGTTTTGCTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCCGTTAAGG
ACAGGTTTTGTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCCGTCAATTCC
TTTGAGTTTCGGTCTTGCGATCGCACTCCCCAGACGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTA
CGGCATGGACTACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCAGCATCGGTAGGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTC
CTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCG
ACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGANNNNNNNNNNTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTT
GGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTT
TTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGTCCCCCCCGTCTTACCGCGGCTGCTG
GCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATA
TTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA
AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTGAGCTTTCTTCAGGAT
TTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCGATTCTTTTTTCGGAGGCCGTTAGGTCAAAG
CCGTAGCGCGCGCCCTGTAGTTTTGAAGCAGGGCGAGACAACTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAACAACGTTCGACTTGC
ATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAGGATCAAAC