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Detailed information on CNT30247924


BLAST search results

BLAST vs Swiss-Prot:
sp|O04133|SRC2_SOYBN, E-value = 4e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30293057Avena sativaTriticum aestivum14.726.9989.87227forward
CNT30455685Avena sativaSaccharum spontaneum20.421.6381.9315forward
CNT30134638Avena sativaLolium perenne41.3250.5987.15638forward
CNT30363948Avena sativaSorghum bicolor8.8144.4491.91136forward
CNT3099938Avena sativaOryza rufipogon15.3522.3687.34237forward

Expression of CNT30247924

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MARLSSLQVGSRMVAGRRLLWLLVGRLIVAVGTRRPCLPVGTRMVARRRQPCLQTGRRPGAGTQPEAEAARTLAERHTHRRRPDSPRRACRRS*

>peptide 2 (35 aa)
MSPMRSPPSAPPRRPAPRPIPMPLLFFGGFTACCW*

>peptide 3 (29 aa)
MDITRTAQTNRGFSWVENRNNSQQKKYSC*

>peptide 4 (63 aa)
MCTSPTSRSPRARSARRSTWREPAALAGTVKRSVAFQFGLRPPARSGATRWRERGSPESETSA*

Sequence

>CNT30247924
GCAACACTAAAACATTCATTTCAACACGCAAATTGATCAAATGGACATAACCAGGACGGCTCAAACTAATCGAGGTTTCAGCTGGGTCGAAAACAGGAAT
AATTCACAACAAAAAAAATACTCATGTTAAAACTTCTATTTACATTACCACCACATGAAGATGCACAGCGGCGGGCGCTGGCGATTTTAGCTGAACATAA
CTGAAGAAGAAAATCGAAGAACAAAAGAACTCTGGTCGCGTCTTCTGAAGCTCGAAACAGTCTAGAAATCGAAGCCACCGCCGTCGTCGAACCCGGCGTC
GTACCCTGCATCGTACCCGCCGGCGTCGCCAATCATGTCGCCGATGAGGAGCCCGCCGAGCGCGCCTCCGAGGAGACCCGCGCCGAGGCCCATCCCCATG
CCGCTGCTCTTCTTCGGCGGCTTCACGGCCTGCTGCTGGTAGCCGTACCCTGCCGGCTGCTGCGGTGGGTAGCCATACCCGTACCCGCCTTGCTGCGGCG
GGGGCGGGTAGCCGTAACCGGCCGGCTGCTGCGGCGGGTACCCGTAGCCGTACTGCGGGGGCGGGGCGCCGTATGGCGCGCCGGTGCTTGGGCCGGCTGC
GGCGGCTGGGTATGCCGTGACGGGCTCGCCTGCCTTGGCTGGCTTTCCTGCAGGTGGGTAGCCAGCGGGTGCGGGGTAGGCGGTGGATGGCTCGCCTGTC
TTCCCTGCAGGTGGGTAGCCGGATGGTGGCGGGTAGGCGTCTGCTTTGGCTGCTGGTGGGTAGGCTGATTGTGGCGGTGGGTACGCGTCGGCCTTGCCTG
CCGGTGGGTACGCGGATGGTGGCGCGTAGGCGTCAGCCTTGCCTGCAGACGGGTAGGCGGCCTGGGGCGGGTACGCAGCCTGAGGCGGAGGCTGCGCGTA
CGCTGGCTGAGCGCCATACGCACCGCCGCCGGCCTGATTCACCTCGCCGAGCTTGTAGGAGAAGTTGAGTACGCCCTGGGGCTTCCCGGACCCGATCTTC
CTGACCTGGTAGGCGACGAACTTGACGGGAACCGCCCCGTCGGGCGCCCCGGAGAGCAGCTCGGAGAGCGGGATGTGTACCTCGCCGACGTCGCGGTCGC
CGAGGGCGCGCTCGGCGCGGAGGAGCACGTGGAGGGAGCCCGCGGCGTTGGCGGGCACGGTGAAGCGTAGCGTGGCGTTCCAGTTCGGGTTGCGTCCGCC
GGCGCGGTCGGGCGCGACGCGCTGGCGCGAGCGCGGGTCGCCGGAGAGCGAGACGAGCGCGTAGACCTCCATCCTGGAGAGCAGGTTGACGTCCTTGAGG
TCCTTCCCCGAGATCAGGGTCAGCTCCAGCGCCCGCTGCGCCATGGCGATCGATCCAGGCGACCGCTCGAGGATCTGATTCCTCCGGTGGGGATTGATTG
GGTGGTGGAGAGGGATTCGCCTTTGCGATTTGTGAATTGTGTTGGAGAGGGGGACAGATCTGGCTGAGGATGGATGGAACCGAAGACGACGACTTGGGAG
GTTGTTGGCACGGCACGAGCTCCTCGTATTATATAGCGCGAAAG