Detailed information on CNT30247794


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF9|TBA4_GOSHI, E-value = 2e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677509Avena sativaSetaria viridis47.1538.0993.5323forward
CNT30507454Avena sativaNicotiana attenuata61.0264.4183.97418forward
CNT3098615Avena sativaSolanum tuberosum44.6759.6585.95306forward
CNT3085161Avena sativaVigna radiata51.9750.7882.87356forward
CNT30721351Avena sativaTriticum spelta33.5834.7490.43230forward
CNT30340361Avena sativaEragrostis tef24.3831.9392.81167forward
CNT30106557Avena sativaOryza longistaminata28.3290.6588.66194forward
CNT30558847Avena sativaPanicum hallii55.9151.992.43383forward

Expression of CNT30247794

Peptides detected in this lncRNA

>peptide 1 (38 aa)
NTRQENFEARMTEHIKRDTCSTEVLMKQFNTDTESAQA*

>peptide 2 (28 aa)
MKWILGYGTRLVWNSVTSTFRAPSNLRDV

>peptide 3 (73 aa)
MPHLKPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMDEGSKALLVISDTDSCSW*

Sequence

>CNT30247794
GAACACACGGCAGGAAAATTTTGAAGCAAGAATGACAGAACATATTAAGCGAGATACTTGTTCCACGGAAGTATTAATGAAGCAGTTCAACACCGACACA
GAAAGCGCTCAGGCTTAACAACTCGAGACCCAGACACAAGTTCCAAGAACAGGGACAGCACAGCAACACACTAAAAGATAGGCAGAGGAGTAGATTCATC
CTCTGACGAGCAGATCAGTAGTCATCCTCATCCTCACCCTCCTCATCGTCACCGCCCTCAGCGCCGACCTCCTCGTAGTCCTTCTCCAGGGCAGCAAGGT
CACCGCCAGGCACCACAGTGGGTGGCTGGTAGTTGATGCCGCACTTGAAGCCCGTGGGGCACCAGTCCACAAACTGGATGGTGCGCTTGGTCTTGATGGT
AGCCACAGCAGCGTTCACGTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCGTGGCGGGGGTCACACTTGGCCATCATG
GATGAAGGCTCAAAGGCGCTGTTGGTGATCTCAGACACAGACAGCTGCTCGTGGTAGGCCTTCTCGGCAGAGATGACTGGCGCGTAGGAGGAGAGCATGA
AGTGGATCCTCGGGTACGGGACCAGGTTGGTCTGGAACTCAGTCACATCCACGTTCAGGGCACCATCGAACCTCAGGGATGTGGT