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Detailed information on CNT30247768


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 4e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696918Avena sativaOryza sativa50.6661.7288.31308forward
CNT30515426Avena sativaJuglans regia33.7215.682.44205forward
CNT30295032Avena sativaTriticum aestivum32.0737.3692.31195forward
CNT30391876Avena sativaTriticum turgidum36.8410092.86224forward
CNT30562499Avena sativaActinidia chinensis13.6537.3985.5483forward
CNT3083687Avena sativaVigna radiata34.2121.8781.73208forward
CNT30555554Avena sativaOryza glaberrima57.7342.9686.61351forward
CNT30438780Avena sativaAegilops tauschii58.3944.2193.52355forward
CNT30663140Avena sativaTriticum dicoccoides69.2461.0192.16421forward
CNT30472632Avena sativaSaccharum spontaneum57.737.1887.46351forward
CNT30136796Avena sativaLolium perenne42.9338.2189.66261forward
CNT30232050Avena sativaAnanas comosus24.6713.1780.67150forward
CNT30721366Avena sativaTriticum spelta47.0455.6485.66286forward
CNT30365247Avena sativaSorghum bicolor31.5828.2889.58192forward
CNT30151249Avena sativaBrachypodium distachyon45.2352.7890.55275forward
CNT30104226Avena sativaOryza rufipogon40.351.2689.8245forward
CNT30581659Avena sativaEchinochloa crusgalli30.4328.7387.03185forward
CNT30117820Avena sativaOryza nivara57.734587.18351forward
CNT30176592Avena sativaVigna angularis34.2125.5281.73208forward

Expression of CNT30247768

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MSMSLKRDLPASRIGSKALSRSISGRISSMGTPFTLIRPRRRRSSSGRSTGRCPQPGGRERWTWRRT*

Sequence

>CNT30247768
CAGAACATCATATCGAATTCATTGTCCAAAAAGATGCGAAACTACTTGGCATAAACTGCTGGATAGATAGGTAGTCAAGGAGTGCGCCAACGACGCCACC
ATACCCAAATCAACGGTAAGACTTCTGGAAACGCGCGCGAGCTCCACGTCCTCCGAACTTCTTGGGCTCGCAGCGGCGCGGGTCAGCGACGAGGAGGGTC
CGGTCGTATCGGCCGAAGATGTCCTTCACCTCCTTCTTGGCGGCCTCGTCGACGAACTTCTGGAAGTAGGCGACGAGCGACTTGGCGATGGCCTGGCGGA
TGGAGTAGATCTGGCTCGTCTTCCCGCCGCCCCGGACGCGGATCCTCATGTCGATGTCCTTGAAGCGGGACCTACCGGCGAGCAGGATCGGCTCGAAGGC
CTTGAGCCGGAGCATCTCGGGGCGGATCAGCTCGATGGGCACGCCGTTCACCTTGATCAGGCCACGGCGACGGCGGTCTTCTTCCGGCCGAAGCACTGGA
CGGTGCCCGCAGCCGGGCGGGAGAGAACGGTGGACATGGCGGCGCACTTGATTGCGGGGAGCGCGGCGGCGCAGCGGCGGGGGTTAGGGTTTTGTGGAGG
CGGCGAAG