CANTATAdb - search

Detailed information on CNT30247726

BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 9e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30180424	Avena sativa	Secale cereale	29.8	32.15	91.35	208	forward

Expression of CNT30247726

Peptides detected in this lncRNA

>peptide 1 (36 aa)
KKSPPTLKSTAPSPANPSYALHRRRRRRRRKEEESR*

>peptide 2 (31 aa)
MQLDISSCFLLPLMIRHCSSMVTFQVECQID*

>peptide 3 (82 aa)
RNPLPPSNRPPHLPQTLATLYIGGGEEEEEKKKNQDDLRRELSPVPLLPQPEGRRVLRQEENGRAKAKGPEVQGQREQACDE*

>peptide 4 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKDQRFKANENKPVMNE*

Sequence

>CNT30247726
AAGAAATCCCCTCCCACCCTCAAATCGACCGCCCCATCTCCCGCAAACCCTAGCTACGCTCTACATCGGCGGCGGCGAAGAAGAAGAAGAAAAGAAGAAG
AATCAAGATGATCTACGACGTGAACTCTCCCCTGTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCGTCCTCCGACAAGAGGAAAATGGAAGAGCAAAAG
CCAAAGGACCAGAGGTTCAAGGCCAACGAGAACAAGCCTGTGATGAATGAATGAGCCCTGTCCGAACAGTTTGCCGCTTGCAAGGAATAGCTGCCAATCA
TGTGACTCCTATTATGTTAAGATGATGGTGTGAACATTTGCTTCATCATTTTGAAAACCTGTTCCGTGCTATTTAAGTTGTTTTAGCTGAGCTTTATATG
TGAAATGGTAACTCAGGGCACTCGAGTCTGGTGATCTGTTATGGTATGGTTATCATCCCCTTTTTGCTTGATGGCATTTTGTCTCATTGAGCTTTTTCAC
TCGCTTCTATTGAAGGGATTCATCTGAGGGAGAATTTGTTGGGAGGCCCTTGGTCTACAGCGTCTGAAAATTGACTTAGTGTAGATTTTATCTTACGGCA
TGCAACTTGATATAAGCTCCTGTTTCCTGTTGCCACTCATGATTAGGCATTGTTCTTCAATGGTTACATTTCAAGTTGAATGCCAAATTGACTGACTG