Detailed information on CNT30247625


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187809Avena sativaSecale cereale24.316.4896.15104forward
CNT30393271Avena sativaTriticum turgidum24.317.2296.15104forward
CNT30136282Avena sativaLolium perenne40.4231.3487.86173forward
CNT30722071Avena sativaTriticum spelta39.4935.2190.53169forward

Expression of CNT30247625

Peptides detected in this lncRNA

>peptide 1 (33 aa)
GRAIAANHILRSRSSPPFPPPPPPPPQTGERTS*

>peptide 2 (90 aa)
ESHRRQPYTEIEIFSTLPAAAAAAAADRRANQLSATRRRRDEGQVEEEEDEEAQEEAPKDEAAIQVGAFGEWKHRLQPGSWTSRDDGIVL*

Sequence

>CNT30247625
GGGAGAGCCATCGCCGCCAACCATATACTGAGATCGAGATCTTCTCCACCCTTCCCGCCGCCGCCGCCGCCGCCGCCGCAGACCGGAGAGCGAACCAGCT
GAGCGCAACCCGCCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTA
GGTGCCTTCGGGGAGTGGAAGCATCGTCTTCAACCAGGCAGCTGGACATCGAGGGATGATGGCATCGTCTTATGATTCCTGATGTGTTCTGTTGTTACAG
TTGTGGATTGTGTTTTATCTGTCATTGATCCTAATAGACCTGTTATCCCCACAGACTGAATTTATGTTATGTAAGGATTATATATGTTTATGTGACTGAA
CCTTATGCTCAAAAAAAAAAAAAAAAAA