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Detailed information on CNT30247616


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XJ39|NLT2A_ORYSJ, E-value = 4e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676686Avena sativaSetaria viridis17.9745.5784175forward
CNT30524117Avena sativaSetaria italica17.9747.8184.57175forward
CNT30555885Avena sativaOryza glaberrima20.8418.6683.74203forward
CNT30471439Avena sativaSaccharum spontaneum18.4867.6783.89180forward
CNT30137433Avena sativaLolium perenne22.6934.3793.21221forward
CNT30367388Avena sativaSorghum bicolor8.7323.4284.7185forward
CNT30371496Avena sativaOryza glumipatula12.8341.9588125forward
CNT30104005Avena sativaOryza rufipogon13.0440.3288.19127forward
CNT30578263Avena sativaOryza barthii20.7419.8483.17202forward
CNT30117882Avena sativaOryza nivara12.8328.7488125forward

Expression of CNT30247616

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MLAALPALIPLMLPANFLRQLHAARLSAVLLAELARLFTPLQQPADGLAPPRA*

>peptide 2 (76 aa)
INIWPGHTQYTGRRKCINMEYRVNSPPCLLKGREKGTSKHRYNRTKGGQLRRAGSTTRTHLLSISHGEMHEMFYSV*

Sequence

>CNT30247616
GAATAAATATATGGCCCGGACATACACAATACACCGGAAGGCGGAAGTGCATAAATATGGAGTATAGAGTAAACTCTCCACCGTGTCTCCTCAAAGGGAG
AGAGAAAGGAACAAGCAAACACCGATACAATCGTACAAAAGGTGGCCAACTACGGAGAGCTGGCTCGACTACTCGTACTCATCTCCTCTCGATCTCTCAC
GGGGAGATGCATGAGATGTTTTATTCGGTATAAATAATATAGGTACGTGTGACGCCGGCGCCGGCGGTGGAGGAGCATAGTAGATGGATCAGTTGATGGA
GTTGCAGTTGACGGAGGTGCTGATGGTGTAGGGGACGCTGACGCCGCACTTGGACGGGATGCTGGCGGCGTTACCGGCCTTGATCCCGCTAATGCTCCCG
GCCAATTTCTTGAGGCAGTTGCACGCGGCACGCTTGTCGGCGGTGCTCTTGGCGGAGCTGGCGAGGCTCTTCACGCCGCTGCAGCAGCCCGCAGACGGGC
TGGCGCCGCCACGAGCGTAGGCCGTGCAGGGGGCCAAGGCCGGTAACGCCGCCAGCATCCCATCCAAGTGCGGCGTCAGCGTCCCCTACACCATCAGCAC
CTCCGTCAACTGCAACTCCATCAACTGATCCTTCCATCCACTACTCCTCCACCGCCGGCGCCGGCGTCACACACACCTATATTACCTTATTTATAATACT
GAATAAAAGCTCGTATGCATCTCCCCGTGTGAGGTCGAGAGGAGTACGAGTAGTCGAGCCAGCTTTGCGTGCTGCGTGGCCGGCAATCCAGTGTATCGGT
GCTTGATTTTTTCTTTTCTCTGCCTTGAGGAGAAACGTACGATCGAGTGTGTACTTTGTATCCCATATTTATACACAGCGTGTCTGGTCCATATATTTAT
TCCTCTATTTCTCTCAATGGCATCTCTCTCTATATTCTAAGTGACTGGAACTTTTAAATACCATTAAACTTGAT