Detailed information on CNT30247486


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672548Avena sativaSetaria viridis76.3471.9992.97455forward
CNT304588Avena sativaZea mays28.1913.0294.05168forward
CNT30683149Avena sativaTriticum urartu42.1156.6693.23251forward
CNT30582252Avena sativaEchinochloa crusgalli45.8141.4393.04273forward
CNT30556995Avena sativaPanicum hallii49.1641.6895.9293forward

Expression of CNT30247486

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MYTVRVLLEEVWEVEDVKEEVGPDSAGDAAEEEPPGELRPALGGLQLVGLLLAPREGERWRRRTW*

>peptide 2 (63 aa)
MATPYMVRTTLRMVTRPMAPSAPAWPCTGVLRSGPVSAKGPTRRYPCARPTSMPRSSGLTAVR*

Sequence

>CNT30247486
GCACGCCCTTGCCATGTTAAAATAGTACTCCCCTGCATGCATGCAAAAGATGGATTGTGCGGAACAGATTCATTTACACGTACATAGGCTCAAGCAAGCA
TGTACACGGTAAGGGTTCTACTTGAAGAAGTATGGGAGGTCGAGGACGTAAAGGAGGAAGTAGGCCCAGACAGCGCCGGAGACGCCGCCGAAGAAGAACC
CCCCGGTGAACTGCGCCCAGCCCTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGCCCCGTGAGGGTGAGCGATGGCGACGCCGTACATGGTGAGGA
CGACGCTGAGGATGGTGACGAGGCCGATGGCGCCGAGCGCGCCGGCCTGGCCGTGCACGGGCGTGTTGCGGAGCGGGCCGGTGAGCGCGAAGGGGCCGAC
GAGGAGGTATCCGTGCGCGAGGCCGACCTCGATGCCGCGGAGCAGCGGGCTGACGGCGGTGCGGTAGGCCGGGAGGTTGGAGAGGTACCATGCGACGAGC
GGGCTGGAGGTGACGGGCGTCTCCAGGCTGCCGATGAAGGGGTCGCCGTTGATGGGCTGCACCACCTGGTAGTTTGGCTGCGGCGGCAGGGAGAGA