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Detailed information on CNT3024735


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382785Populus trichocarpaTriticum turgidum26.4818.7987.41143forward
CNT30136973Populus trichocarpaLolium perenne19.8125.4886.92107forward
CNT30208739Populus trichocarpaHelianthus annuus22.2230.3888.33120forward
CNT30575727Populus trichocarpaOryza barthii19.0723.1587.38103forward

Expression of CNT3024735

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MVGFLSRDDWCIGGKHEVDSWVRDQVSLEFSNIHIQSTIKPQRGGQGGNDLELQYKKSCQICTIFKFEKATEE

Sequence

>CNT3024735
AAAAAAACTTTCAATAACAGTCGTCCATCACATTCCATGTAGAGTAGACATGGCTTTAGCATACGCAGGTAGATTTTAAACACCTTTGAAACAATAAAAG
CTTCAAATGGTGCAATTACATGTAGATATTCATTAAAAATAAAAATACAACATATGGCAATGCCATACAGAAACACATCATATTAGGCTACACCCACTAC
GAAGCATTTCACATGTACTCGTCACCATCATCATCATCACCCTCAGCTGATTCAGCACCAACCTCCTCATAATCCTTGGGCACAACATCACCACGGTACA
TCAGACAACAGAGAGTTGTTCATGGTAGGCTTTCTCAGCAGAGATGACTGGTGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTAAGGGACCAAGTTA
GTCTGGAATTCAGTAACATCCACATTCAAAGCACCATCAAACCTCAGAGAGGCGGTCAAGGAGGAAATGACCTGGAATTACAATACAAAAAGTCATGTCA
GATCTGTACTATCTTTAAATTTGAGAAAGCTACAGAAGAA