Detailed information on CNT30246829


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689517Avena sativaTriticum urartu13.9924.2884.33134reverse complement

Expression of CNT30246829

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTGFGSLGPKTKNLVVAGGLTAFVVGAYYYTMHAVGGTDELQATIDKFENLKKKDAAESAVATNPSTPAST*

>peptide 2 (29 aa)
MPPNPPSPRTPPPQHQRREKECYYSLPLQ*

>peptide 3 (30 aa)
MFFLHVQELLFLWLHCLYITLTDCEDFFSC*

>peptide 4 (34 aa)
KLNKNFLFVFLEPLNRTNYTDKNENIGVKNINIV*

>peptide 5 (83 aa)
MLLFPAPPVARFLSSSSCCLITCCPRAMLLYDKISIKGGSREPIMTSFGVLNQWCLKFADTWPCSSFMSKNYYFYGCIVYILH*

Sequence

>CNT30246829
AGAAACTCAACAAGAATTTTTTGTTTGTTTTTTTAGAACCCCTCAACAGGACTAATTACACGGACAAAAATGAGAATATTGGTGTTAAGAATATAAATAT
AGTCTAACCATTTTCATGTGTTCGAACTTTTGGTTAAGATGACTGGTGTATCAATTTAATAGCTGGGCCGCCGCAGAAACAAAGCAAGCCTTCCACAGGT
TTGTCGAGGTCCAGCCCACAGCACCCGTCCGAGACCCACTTGCCCCTTCACCTGCTACGTTCCGCTGCTGCTGCCCTTGCCTTCACCGCGCCGCCGCCGC
CGCCGTCGTCCTCCTCGCGCCGCCTGCTCTCCGCACCGATTCATCCTTCGTTCAGCACTACTGCAGTCGCTAGAGATGACGGGATTCGGCTCCCTGGGTC
CCAAGACCAAGAACCTGGTGGTGGCAGGCGGCCTGACGGCGTTCGTTGTTGGCGCATACTACTACACCATGCATGCGGTGGGCGGCACGGACGAGCTCCA
GGCCACCATCGACAAGTTTGAGAACCTGAAGAAAAAGGATGCCGCCGAATCCGCCGTCGCCACGAACCCCTCCACCCCAGCATCAACGTAGAGAAAAAGA
ATGCTATTATTCCCTGCCCCTCCAGTAGCGAGGTTTCTGTCTAGTAGTTCGTGCTGCCTCATAACCTGCTGCCCCAGGGCCATGCTTTTGTATGATAAGA
TCAGTATCAAAGGGGGTAGTAGAGAACCGATCATGACAAGTTTTGGTGTGCTTAATCAGTGGTGTCTGAAATTTGCTGATACTTGGCCATGTTCTTCCTT
CATGTCCAAGAATTATTATTTTTATGGCTGCATTGTCTATATATTACACTGACCGATTGTGAGGATTTTTTTTCTTGCTAGCCAAGAAAGCCGTGATGTA
ATTAATACTCCCTCCCTCATAACATTGGATGCACTTTTGGTTAAAAGTGAACCTTTTT