CANTATAdb - search

Detailed information on CNT30246600

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG86|RS271_HORVU, E-value = 9e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693922	Avena sativa	Oryza sativa	59.93	64.87	92.27	362	forward
CNT30674820	Avena sativa	Setaria viridis	37.91	43.21	93.01	229	forward
CNT30285916	Avena sativa	Triticum aestivum	68.54	67.76	93.96	414	forward
CNT30435425	Avena sativa	Aegilops tauschii	61.92	61.21	94.92	374	forward
CNT30720077	Avena sativa	Triticum spelta	46.52	37.67	95.37	281	forward

Expression of CNT30246600

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAVGGRLRALRRRRWWRRRGRVW

>peptide 2 (29 aa)
FKLASHNLSNRRTNIQETQYSRFSFNDKR*

Sequence

>CNT30246600
TTTAAACTCGCGTCGCATAATCTGAGTAATAGGCGAACAAATATCCAGGAAACACAATACTCCAGGTTCAGTTTTAACGACAAACGGTAGACATATCTAA
ATGAGATGTAACCAACAGCTCGATTCAGTTCTCGATAGGTAGGGTAAAGTAAAGCATAGCAAACGCGGAGCCACCTCTAAGCCTTCTGGTTGTAGACGTA
GGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAAGTCCCGGCGCCGCACTCGGCGTTGGGGCACTCCTTCCTGAGCCTGGTG
ACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGAGGGCGAGCTTCACCTTCTTGTGCTTGTGCTTTTGCTTCTTGGGCTTGGTGTACGTCTTCT
TCTTGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTT
GCCAGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGTGGGGGGTCGCCTCCGCGCGCTGCGGCGGCGACGCTGGTGGCGGCGGCGGGGTAGGGTT
TGGG