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Detailed information on CNT3024644


BLAST search results

BLAST vs Swiss-Prot:
sp|P20364|TBB1_DAUCA, E-value = 2e-123

BLAST vs NONCODE:
NONPOPT002096, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522155Populus trichocarpaSetaria italica14.0332.6583.62287forward
CNT30641079Populus trichocarpaNymphaea colorata14.7240.5185.71301forward
CNT30516889Populus trichocarpaJuglans regia9.2931.484.21190forward
CNT30617295Populus trichocarpaSesamum indicum8.024087.8164forward
CNT30402401Populus trichocarpaBeta vulgaris14.6225.1784.28299forward
CNT30629386Populus trichocarpaVigna unguiculata6.9955.4380.42143forward
CNT30196370Populus trichocarpaPisum sativum22.5448.3785.68461forward
CNT30486254Populus trichocarpaOlea europaea948.0486.41184forward
CNT30710178Populus trichocarpaGlycine max14.0367.6985.02287forward
CNT30168132Populus trichocarpaPistacia vera8.6142.8285.23176forward
CNT30291318Populus trichocarpaTriticum aestivum12.4276.2886.22254forward
CNT30542792Populus trichocarpaBrassica napus12.7159.9184.23260forward
CNT30442409Populus trichocarpaAegilops tauschii13.5941.4984.17278forward
CNT30252641Populus trichocarpaAvena sativa24.6962.1284.75505forward
CNT30313575Populus trichocarpaCamelina sativa9.0579.483.78185forward
CNT3062349Populus trichocarpaArabidopsis lyrata8.920.983.52182forward
CNT3078381Populus trichocarpaBrassica juncea10.7682.484.09220forward
CNT30614070Populus trichocarpaArabis alpina21.4231.6984.47438forward
CNT3015387Populus trichocarpaZea mays17.1121.6384350forward
CNT30608822Populus trichocarpaGossypium raimondii19.666085.07402forward
CNT30209019Populus trichocarpaHelianthus annuus27.3867.0783.39560forward
CNT30627268Populus trichocarpaDaucus carota20.7834.3384.94425forward
CNT30595966Populus trichocarpaOryza meridionalis10.6635.5684.86218forward
CNT30369403Populus trichocarpaOryza glumipatula18.4857.5386.24378forward
CNT30424412Populus trichocarpaPapaver somniferum27.4849.4781.32562forward
CNT30570854Populus trichocarpaVitis vinifera7.1472.6492.47146forward
CNT3033661Populus trichocarpaTheobroma cacao10.22100.4888.52209forward
CNT3054138Populus trichocarpaAmborella trichopoda15.7563.5181.99322forward
CNT3036150Populus trichocarpaCucumis melo4.9429.9788.12101forward
CNT30150001Populus trichocarpaBrachypodium distachyon3.7724.3789.6177forward
CNT3099978Populus trichocarpaOryza rufipogon15.0638.0284.74308forward

Expression of CNT3024644

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAWVSSAHHVLGIPHLLGEFWDSQSPVLLRTT*

>peptide 2 (32 aa)
MAWVSSAHHVLGIPHLLGEFWDSQSPVLLRTT*

>peptide 3 (34 aa)
MHLQLGVVNLRILKQISYNASLSSTIHSSAFSTN*

>peptide 4 (75 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRLNISWMEVEFPMKVDAIASPLGGISHTLDFTLLGIHSTK*

>peptide 5 (77 aa)
MHYAPKRSMVLNLGNRQIKLVSSQNALTARSSQLENPETNIIQCLVVKHHTLISILNQLMNRKGSIVWFHDSIRNLR*

>peptide 6 (32 aa)
YYSNRPDSEIHHAHFKAVKHIHAEYAVKASSR*

Sequence

>CNT3024644
TTACTATTCAAACCGCCCAGACAGTGAAATTCACCACGCACATTTCAAAGCAGTAAAACATATTCATGCAGAATACGCTGTAAAAGCAAGTAGCAGATAG
ACTTTGCACAAATAATTACATCCCGGCAGCATCTTCTTCCTCGTCCTCATAATCAACTTCTTCATCAGCTGTTGCATCCTGGTACTGCTGATATTCAGAA
ACGAGGTCATTCATGTTGCTCTCAGCTTCAGTGAATTCCATTTCATCCATGCCTTCTCCGGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATAGCTG
TGAATTGCTCACTTACACGCCTGAACATCTCCTGGATGGAGGTTGAGTTTCCAATGAAGGTGGATGCCATAGCAAGTCCTCTTGGAGGAATATCACACAC
ACTAGACTTCACATTGTTGGGGATCCACTCAACAAAGTAGGATGAATTCTTGTTCTGGACATTGATCATTTGTTCATCAACTTCCTTAGTGCTCATCTTA
CCCCGGAACATAGCGGAGGCAGTCAGGTAGCGACCATGGCGTGGGTCAGCAGCGCACATCATGTTCTTGGCATCCCACATCTGCTGGGTGAGTTCTGGGA
CAGTCAGAGCCCTGTACTGCTGAGAACCACGTGAGGTCAGAGGAGCAAATCCAACCATGAAAAAGTGCAGACGGGGGAAGGGGATGAGGTTCACTGCAAG
CTTCCTAAGATCAGAGTTGAGCTGACCAGGGAACCTGAGGCAGCAGGTAGCGACCATGGCGTGGGTCAGCAGCGCACATCATGTTCTTGGCATCCCACAT
CTGCTGGGTGAGTTCTGGGACAGTCAGAGCCCTGTACTGCTGAGAACCACGTGAGGTCAGAGGAGCAAATCCAACCATGAAAAAGTGCAGACGGGGGAAG
GGGATGAGGTTCACTGCAAGCTTCCTAAGATCAGAGTTGAGCTGACCAGGGAACCTGAGACAGCAGGTGACACCGCTCATTGTTGCAGAGATCAGATGAT
TCAGGTCGCCAACTGCAACAATCATTAACAATCCAAAGTTGATTCAGCATTTTTTTAATCTCAATTGAAGCAGAAAAACACAAAAAATAACCAAGCAATT
TGAAAATAAACAGGCCAACTTCATAATAGACAGGACCCAAAACTTTTGTTCCCTGAAAATTACCCCACTACACCATCAATCAAATTTTAAAATTGACAGT
GTCATAAAATCAACCACCTAACATTTGGCACAACCACGTTTCATCAACCCATGCAATCACCTATATCCTACTAGATACATATTTAAGATCCATTGAGACA
ACCCCACATTGCTCCTCAGGCAGACAGAGATTAAGATACAGATTGCAACAACTCACAATGAAATAATTAAGTGACTGTCAACATAAGAGTAAAACTACAA
AAAAAAATAAAAACACTTCAAAACGTCAATGCAGCTAATATTTGAACAAGGCACCTTGTTAGCATGTGGAGAACACAAACAAACAACATGACCACGCGGC
GTGGAACAGAAGTATAGCAGCAAGGAACAGGGGCACGTAGTTAAAAATGCACCTCTATCTCGATTCTGATTTCAAGCCATGATAAAGATTATACATTTCG
GACAATAGATGAAAAAACCCAAACCCACCAGCCCAGCAAAATGAGGGAGCTTATGAAAACAAATTATGGCTTAATCACAGATTGCTTCACCAAAATCTGA
ATGCATTATGCACCAAAAAGAAGCATGGTACTAAATTTGGGCAACAGACAAATAAAGCTAGTTTCAAGCCAAAATGCACTTACAGCTAGGAGTAGTCAAC
TTGAGAATCCTGAAACAAATATCATACAATGCCTCGTTGTCAAGCACCATACACTCATCAGCATTCTCAACCAACTGATGAACAGAAAGGGTAGCATTGT
ATGGTTCCACGACAGTATCAGAAACCTTAGGTGATGGGAACACAGAGAAAGTAAGCATCATTCTATCAGGGTATTCCTCTCTGATCTTAGAAATCAGTAG
AGTCCCCATTCCAGATCCAGTTCCTCCACCGAGCGAGTGGCAAAC