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Detailed information on CNT30246414


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6I544|GL52_ORYSJ, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690449Avena sativaOryza sativa14.6632.5985.03147forward
CNT30347816Avena sativaEragrostis tef25.4212.1186.67255forward
CNT30111473Avena sativaOryza longistaminata4.7921.4389.5848reverse complement
CNT3099753Avena sativaOryza rufipogon20.1422.6785.15202forward
CNT30117885Avena sativaOryza nivara21.1424.284.91212forward

Expression of CNT30246414

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MAMDCVPGSWLLNAEMTAAGLSPVFFWKCTRPLGKAKTSPWVMVLAKSLLAVVLVAPGLARTPLKKSSAVAFALHGNPFSFSSARVCRGRMMSN*

>peptide 2 (78 aa)
MLKAVIGGQTNQRANQWNLNRSAKQHVGFLLHFLALWGKLGLDLVHLLGSDLEGLGEHVVRHLRGSPEEGHGDGLRAG*

Sequence

>CNT30246414
CACCATTGCAGATAGTAAAAATGAGCGAGCTGCGAATCTGGAAATTATGATATAGTACATGCTTAAAGCAGTTATTGGAGGACAAACAAATCAACGAGCA
AACCAGTGGAACTTGAACAGAAGTGCGAAACAGCATGTTGGATTCTTGCTCCACTTCTTAGCTCTTTGGGGCAAACTTGGTCTTGATCTTGTCCACCTCC
TCGGTTCCGATCTGGAAGGCCTTGGCGAGCACGTCGTCAGGCACCTCCGGGGAAGCCCCGAAGAGGGTCATGGCGATGGACTGCGTGCCGGGTAGCTGGC
TGTTGAATGCCGAGATGACTGCTGCTGGCTTGTCACCGGTGTTCTTCTGGAAGTGCACGAGGCCCCTCGGGAAGGCGAAGACGTCGCCCTGGGTGATGGT
CTTGGCGAAGAGCTTGTTGGCGGTGGTGTTGGTGGCCCCGGGCTTGGCGAGGACGCCGCTGAAGAAGTCCTCCGCCGTCGCGTTCGCCTTGCACGGGAAC
CCGTTCAGCTTCAGCTCTGCGCGTGTTTGCAGAGGGAGAATGATGTCGAACTGAATCACGTTCGGAACTACTATAAGCTGGTAAATTTGTGGATCTAACG
TCCACTTGCACCCATCCTCATCACTGCCTCCAACCAAGAACCGTCACCGGATTTAGCATTAACTACCTAACGTGAATAGTATCTCACTGTACTAGTACGT
CAGAGTGCCAGAACGTACAAAACCGTATAGCCATACCCAGTGGCCACACCTCTTCAATGCGGGACGGCAGTACCGATTCAATGCGAACGAAACAGAGGAG
GAATTGAGAGCTTCGCGTACCTGAGCTGAGATCGGCGACGCAGATGTCCTGGAGGTAGTCCGGGTCGCCGGCGAGCGACGGCACTGCCAGGACGAGCGCC
GCCGCGACCGCCGCAAGAAACAGGGAGGTGCAAGTCCTGGCCATCATTGATCTCACTGCCTTTGCGGCTCTCCTTACCCTCAGACAGATGGTTTCTGTTG
CTG