Detailed information on CNT30246308


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30460105Avena sativaSaccharum spontaneum36.3612.8983.65104forward
CNT30595662Avena sativaOryza meridionalis36.0112.0984.47103forward

Expression of CNT30246308

Peptides detected in this lncRNA

>peptide 1 (49 aa)
SRTSKRSRALDAADVACSCIFAGMSVSSTVAFPSSISSLRLFPLQADAG*

>peptide 2 (62 aa)
VEDVEAVEGPGRRRRRLQLHLRRHVGVLHRRLPFQHFVASPLSSAGGCRIGTRFHAHASTST*

>peptide 3 (64 aa)
RGRRSGRGPWTPPTSPAAASSPACRCPPPSPSLPAFRRFASFLCRRMPDRHKISRSCVHVNVTC*

Sequence

>CNT30246308
GTCGAGGACGTCGAAGCGGTCGAGGGCCCTGGACGCCGCCGACGTCGCCTGCAGCTGCATCTTCGCCGGCATGTCGGTGTCCTCCACCGTCGCCTTCCCT
TCCAGCATTTCGTCGCTTCGCCTCTTTCCTCTGCAGGCGGATGCCGGATAGGCACAAGATTTCACGCTCATGCGTCCACGTCAACGTGACGTGCTAACGA
GATTCGAACGGAAATGATAGGAAAGACGTGCTAACGACCAGCTCGATTGAGGCACAGGAAATGATTATCATTATGATAGGAGAGAG