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Detailed information on CNT30246244


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 1e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30182233Avena sativaSecale cereale76.2999.8492.75621forward
CNT30222279Avena sativaHordeum vulgare36.6198.6896.31298forward
CNT30457014Avena sativaSaccharum spontaneum54.1857.7292.97441forward
CNT30134072Avena sativaLolium perenne88.4599.1793.89720forward
CNT3066796Avena sativaLeersia perrieri47.1798.7193.23384forward
CNT30338563Avena sativaEragrostis tef50.3799.0390.24410forward
CNT30595456Avena sativaOryza meridionalis52.2174.5693.88425forward
CNT30580107Avena sativaEchinochloa crusgalli54.1884.9792.74441forward
CNT30497454Avena sativaDigitaria exilis45.710092.47372forward

Expression of CNT30246244

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MGSTTSWRSSSNLGFRRWCAMFSFLPVKKLSTTITLFPCSSSLSTRWLPTKPAPPVTTTRRGGGRKPAGTREGEE*

>peptide 2 (36 aa)
MAGERRGRGGVWCGGGKVGRRRRKRAQVCEGVLHLLR

>peptide 3 (41 aa)
MRGTRGGRSGRPREGWARQHRGGAARTWGSAGGARCSPSCL*

>peptide 4 (48 aa)
TYRINMPPISLLLWMLKWITINFTCASQQEPCTNPLCQTQHIQGSHDI*

>peptide 5 (51 aa)
MRRRRRVGGGLVELLHGGRAAGKRRCLVRWGKGGQEEKKTSSSVRGGPAFVA

Sequence

>CNT30246244
ACCTATAGGATTAACATGCCCCCAATAAGTCTCCTTCTGTGGATGCTCAAGTGGATCACCATAAACTTCACTTGTGCTAGTCAACAAGAACCTTGCACCA
ATCCGCTTTGCCAAACCCAACATATTCAAGGTTCCCATGACATTTGATATGATCGTCTTGATGGGGTTGAACTTGTAGTGCACGGGCGATGCGGGGCACG
CGAGGTGGTAGATCCGGTCGACCTCGAGAAGGATGGGCTCGACAACATCGTGGCGGAGCAGCTCGAACCTGGGGTTCCGCAGGTGGTGCGCGATGTTCTC
CTTCCTGCCTGTGAAGAAGTTGTCCACCACGATCACGCTATTCCCCTGCTCCAGCAGCCTGTCGACGAGGTGGCTGCCCACGAAGCCCGCCCCGCCGGTG
ACGACGACGCGGCGAGGCGGCGGGCGGAAGCCCGCGGGGACCCGGGAGGGGGAAGAGTGAGAGACAAAGGAGAAGATGGGGCTGTGGTCTACGACGCTAG
AGGGTGATAGAGAGAATAGGTAGGGGCGGAGGAGGAAGAAGGAGGTGGCGATGAGCGCGCCGAGGAGGACGAAGAGGAGGCGCTGCTCGCGGAGGAGGTA
GCCGACCCAGGTGCGCGGACCAGGGCGCGCGGGCTTGGAGACCTTGGACGCCGGCGCATGCGCCGGCGAAGGCGCGTGGGTGGGGGACTTGTGGAGCTGC
TTCATGGCGGGAGAGCGGCGGGGAAGAGGCGGTGTTTGGTGCGGTGGGGGAAAGGTGGGCAGGAGGAGAAGAAAACGAGCTCAAGTGTGCGAGGGGGTCC
TGCATTTGTTGCGA