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Detailed information on CNT3024604


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT002763, E-value = 2e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535492Populus trichocarpaEucalyptus grandis20.862.5488.12202forward
CNT30403132Populus trichocarpaBeta vulgaris18.9557.3283.7184forward
CNT3096726Populus trichocarpaSolanum tuberosum20.684.3983.5200forward
CNT30137932Populus trichocarpaLolium perenne15.0457.9486.3146forward
CNT30717191Populus trichocarpaMalus domestica golden9.7847.2686.3295forward
CNT30624889Populus trichocarpaDaucus carota36.5693.4282.54355forward
CNT30118300Populus trichocarpaCitrus clementina16.8960.2982.32164forward
CNT30604869Populus trichocarpaOryza punctata14.7354.7984.62143forward

Expression of CNT3024604

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPVQPYKSTPSTHPSPQNLGCYTVHYMHQNLRRRIFLNLQVSVVV*

>peptide 2 (38 aa)
QDIVVASSTSATSIINPAKRCQYSHTKAHLPPTPLPKI*

>peptide 3 (37 aa)
MGGGWIYLPPFSPTSNVYLSKNKHAHTHTLRRRKEPG*

Sequence

>CNT3024604
CCAAGACATTGTTGTAGCATCATCAACAAGTGCTACTAGCATTATTAATCCAGCAAAGAGATGCCAGTACAGCCATACAAAAGCACACCTTCCACCCACC
CCTCTCCCCAAAATCTAGGATGCTATACAGTTCACTACATGCACCAAAATCTCCGTAGGAGAATTTTCCTGAATTTGCAAGTTTCAGTGGTGGTATAATG
CCCACCGAACATTTAAGTCTAAATCATGATCTTGGGATTTTAGGGGTGGGGTGGTGATGTTGGCACTACATTTTTTTAAGGTTAACTGTCACTATCCTTT
ATAAATGTACCTACTCTCCATTCAATTTCCATAAAATTTATTGGATACTTTTGACATTTCATTTGAAGTTGTGCCAACAAACTAATAGGTGTGCCTATAG
CACCACCGAGTATTCCCAGGGGACTGCTCACCTGGTACTTCCGACTTGAATTTTAAAGTTAAAGATTATAGAATGGGTGGGGGATGGATTTACCTCCCAC
CATTTAGCCCAACATCCAATGTGTATCTTTCAAAAAACAAACACGCACACACACACACACTGAGGAGGAGGAAAGAACCTGGGTAGAGTCTTCAACACCA
CAATTAGTGATCCTGAAAGAGTGAACAGCCCAGTTCAAATAAAAAGCATGCTCGGACTTCCTTAGGGGCAAGCCCTCTCTCAAAGCAGCTTCATCAATCT
GGATGACCGTAATTCCGGCTTTCTCAAGATCCTCAACCTCATCCTTGATGGCCAAAGCAATTTGATAACAGGACCAGTAAGCATTCCCTTCATGGGTCGC
TTAGTCATACTTTGAGCCAACGAAGACCAGAACACAGTCATGGCCTTGGGGCGGCTCACATCACCATAGATGATAGGAGGCTTGACGCAGCGAGAACCGT
AAGATTGGACCCAGCCATTAGCAGTGAAGGCAAAACCAGACAATTGCTCACCAAAGTACTCAACCATGTCA