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Detailed information on CNT3024558


BLAST search results

BLAST vs Swiss-Prot:
sp|P25862|TBB1_AVESA, E-value = 1e-140

BLAST vs NONCODE:
NONPOPT002096, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Populus trichocarpaSetaria viridis27.6760.7786.34505forward
CNT30553024Populus trichocarpaOryza glaberrima19.5124.9382.87356forward
CNT30261872Populus trichocarpaBrassica rapa33.6469.3881.11614forward
CNT30681848Populus trichocarpaTriticum urartu30.2562.3784.42552forward
CNT30722476Populus trichocarpaTriticum spelta20.9957.2581.98383forward
CNT30341625Populus trichocarpaEragrostis tef33.4262.5683.93610forward
CNT30706519Populus trichocarpaPrunus avium25.8656.9484.53472forward
CNT30575061Populus trichocarpaOryza barthii24.1648.5185.49441forward
CNT30117026Populus trichocarpaOryza nivara13.8137.584.92252forward

Expression of CNT3024558

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRLNISWMEVEFPMKVDAIASPLGGISHTLDFTLLGIHSTK*

>peptide 2 (77 aa)
MHYAPKRSMVLNLGNRQIKLVSSQNALTARSSQLENPETNIIQCLVVKHHTLISILNQLMNRKGSIVWFHDSIRNLR*

>peptide 3 (34 aa)
MHLQLGVVNLRILKQISYNASLSSTIHSSAFSTN*

>peptide 4 (32 aa)
MAWVSSAHHVLGIPHLLGEFWDSQSPVLLRTT*

>peptide 5 (32 aa)
YYSNRPDSEIHHAHFKAVKHIHAEYAVKASSR*

Sequence

>CNT3024558
TTACTATTCAAACCGCCCAGACAGTGAAATTCACCACGCACATTTCAAAGCAGTAAAACATATTCATGCAGAATACGCTGTAAAAGCAAGTAGCAGATAG
ACTTTGCACAAATAATTACATCCCGGCAGCATCTTCTTCCTCGTCCTCATAATCAACTTCTTCATCAGCTGTTGCATCCTGGTACTGCTGATATTCAGAA
ACGAGGTCATTCATGTTGCTCTCAGCTTCAGTGAATTCCATTTCATCCATGCCTTCTCCGGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATAGCTG
TGAATTGCTCACTTACACGCCTGAACATCTCCTGGATGGAGGTTGAGTTTCCAATGAAGGTGGATGCCATAGCAAGTCCTCTTGGAGGAATATCACACAC
ACTAGACTTCACATTGTTGGGGATCCACTCAACAAAGTAGGATGAATTCTTGTTCTGGACATTGATCATTTGTTCATCAACTTCCTTAGTGCTCATCTTA
CCCCGGAACATAGCGGAGGCAGTCAGGTAGCGACCATGGCGTGGGTCAGCAGCGCACATCATGTTCTTGGCATCCCACATCTGCTGGGTGAGTTCTGGGA
CAGTCAGAGCCCTGTACTGCTGAGAACCACGTGAGGTCAGAGGAGCAAATCCAACCATGAAAAAGTGCAGACGGGGGAAGGGGATGAGGTTCACTGCAAG
CTTCCTAAGATCAGAGTTGAGCTGACCAGGGAACCTGAGGCAGCAGGTGACACCGCTCATTGTTGCAGAGATCAGATGATTCAGGTCGCCAACTGCAACA
ATCATTAACAATCCAAAGTTGATTCAGCATTTTTTTAATCTCAATTGAAGCAGAAAAACACAAAAAATAACCAAGCAATTTGAAAATAAACAGGCCAACT
TCATAATAGACAGGACCCAAAACTTTTGTTCCCTGAAAATTACCCCACTACACCATCAATCAAATTTTAAAATTGACAGTGTCATAAAATCAACCACCTA
ACATTTGGCACAACCACGTTTCATCAACCCATGCAATCACCTATATCCTACTAGATACATATTTAAGATCCATTGAGACAACCCCACATTGCTCCTCAGG
CAGACAGAGATTAAGATACAGATTGCAACAACTCACAATGAAATAATTAAGTGACTGTCAACATAAGAGTAAAACTACAAAAAAAAATAAAAACACTTCA
AAACGTCAATGCAGCTAATATTTGAACAAGGCACCTTGTTAGCATGTGGAGAACACAAACAAACAACATGACCACGCGGCGTGGAACAGAAGTATAGCAG
CAAGGAACAGGGGCACGTAGTTAAAAATGCACCTCTATCTCGATTCTGATTTCAAGCCATGATAAAGATTATACATTTCGGACAATAGATGAAAAAACCC
AAACCCACCAGCCCAGCAAAATGAGGGAGCTTATGAAAACAAATTATGGCTTAATCACAGATTGCTTCACCAAAATCTGAATGCATTATGCACCAAAAAG
AAGCATGGTACTAAATTTGGGCAACAGACAAATAAAGCTAGTTTCAAGCCAAAATGCACTTACAGCTAGGAGTAGTCAACTTGAGAATCCTGAAACAAAT
ATCATACAATGCCTCGTTGTCAAGCACCATACACTCATCAGCATTCTCAACCAACTGATGAACAGAAAGGGTAGCATTGTATGGTTCCACGACAGTATCA
GAAACCTTAGGTGATGGGAACACAGAGAAAGTAAGCATCATTCTATCAGGGTATTCCTCTCTGATCTTAGAAATCAGTAGAGTCCCCATTCCAGATCCAG
TTCCTCCACCGAGCGAGTGGCAAAC