Detailed information on CNT30245388


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30283003Avena sativaChenopodium quinoa94.2234.1498.16326forward
CNT3020470Avena sativaCitrullus lanatus80.0651.3998.56277forward
CNT30406993Avena sativaBeta vulgaris21.6819.3890.6775forward
CNT3094274Avena sativaSolanum tuberosum26.330.8598.991forward
CNT30509971Avena sativaSolanum lycopersicum25.727.1397.7589reverse complement
CNT30554477Avena sativaOryza glaberrima76.0136.3899.24263forward
CNT30605146Avena sativaGossypium raimondii94.2221.3598.77326forward
CNT3067980Avena sativaLeersia perrieri46.5353.4997.52161forward
CNT30715685Avena sativaMalus domestica golden24.576.9895.2985forward
CNT30682012Avena sativaTriticum urartu94.2228.6599.39326forward
CNT30346087Avena sativaEragrostis tef94.2231.5399.39326reverse complement
CNT30484250Avena sativaChara braunii54.6226.0394.71189forward
CNT30707286Avena sativaPrunus avium23.4112.8293.8381reverse complement
CNT30644906Avena sativaCannabis sativa39.642.8194.89137forward
CNT3056076Avena sativaAmborella trichopoda80.6412.1296.06279reverse complement
CNT3099709Avena sativaOryza rufipogon43.066.84100149reverse complement

Expression of CNT30245388

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PYELIAPDKLPTSQCPAPPRRIGAAVRHP*

Sequence

>CNT30245388
TCCTTATGAGCTAATTGCCCCAGATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCCGAAGGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGAG
TGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAGGTGCACGGGGT
CTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAG
GTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGCTAG