Detailed information on CNT3024497


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549105Populus trichocarpaIpomoea triloba77.9438.4981.28219forward
CNT30631135Populus trichocarpaVigna unguiculata27.056.4785.5376forward
CNT30502187Populus trichocarpaNicotiana attenuata33.812.6187.3795forward
CNT30709876Populus trichocarpaGlycine max78.2961.6280.91220forward
CNT30163276Populus trichocarpaPistacia vera37.0133.7788.46104forward
CNT30297784Populus trichocarpaTriticum aestivum21.716.9690.1661forward
CNT30224613Populus trichocarpaHordeum vulgare21.7122.5190.1661forward
CNT30564990Populus trichocarpaActinidia chinensis27.0517.9788.1676forward
CNT30590202Populus trichocarpaMusa acuminata29.549.1889.1683forward
CNT3061285Populus trichocarpaArabidopsis lyrata27.410.5984.4277forward
CNT30599410Populus trichocarpaFraxinus excelsior23.139.889.2365forward
CNT30232947Populus trichocarpaAnanas comosus18.5121.9490.3852forward
CNT30623024Populus trichocarpaDaucus carota26.6922.5286.6775forward
CNT30477407Populus trichocarpaArabidopsis halleri27.412.0785.7177forward
CNT30644102Populus trichocarpaCannabis sativa25.9816.7887.6773forward
CNT3054194Populus trichocarpaAmborella trichopoda211.0491.5359forward
CNT30319296Populus trichocarpaAsparagus officinalis32.7420.7786.9692forward
CNT30118191Populus trichocarpaCitrus clementina67.6218.2981.58190forward
CNT3038976Populus trichocarpaCucumis melo27.0511.1386.8476forward
CNT30603734Populus trichocarpaOryza punctata21.714.6588.5261forward
CNT30112149Populus trichocarpaFicus carica34.8812.4887.7698forward

Expression of CNT3024497

Peptides detected in this lncRNA

>peptide 1 (86 aa)
IVAKCTKNTANPIGREDSVDKNKSADNLSTKAITFGVTMSDHIGTTIMQLVVCFPVKSFHHTSTAYGTKALHHHVEHGPRQGQFPC*

Sequence

>CNT3024497
GGATTGTGGCCAAGTGCACCAAGAACACAGCGAACCCAATTGGCAGAGAAGACAGTGTAGACAAGAATAAAAGTGCCGACAATCTCAGCACCAAGGCCAT
CACCTTTGGTGTAACCATGAGCGACCATATTGGCACCACCATTATGCAACTCGTAGTTTGTTTTCCCGTAAAATCCTTTCACCACACCAGCACCGCATAT
GGCACCAAGGCACTGCATCACCATGTAGAACACGGCCCTCGTCAAGGACAGTTTCCTTGCTAAGAATAGCCCAAAAGTCAC