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Detailed information on CNT30244810


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 1e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Avena sativaSetaria italica50.8754.884.91411forward
CNT30530404Avena sativaEucalyptus grandis3784.2383.61299forward
CNT30316147Avena sativaCorylus avellana25.8728.0584.69209forward
CNT30703138Avena sativaQuercus lobata36.1455.7380.14292forward
CNT30615836Avena sativaSesamum indicum18.0738.1284.25146forward
CNT3021362Avena sativaCitrullus lanatus22.2827.6582.22180forward
CNT30727603Avena sativaCorchorus capsularis17.3328.3482.86140forward
CNT3068683Avena sativaQuercus suber36.1459.3580.48292forward
CNT30524728Avena sativaPhaseolus vulgaris39.659.2679.06320forward
CNT30504810Avena sativaNicotiana attenuata18.5623.0484.67150forward
CNT30636701Avena sativaCapsicum annuum18.5636.586150forward
CNT3098150Avena sativaSolanum tuberosum13.7422.6586.49111forward
CNT30289293Avena sativaTriticum aestivum15.9742.4385.27129forward
CNT30590847Avena sativaMusa acuminata42.8275.7182.66346forward
CNT30539234Avena sativaBrassica napus41.0936.2878.01332forward
CNT30510868Avena sativaSolanum lycopersicum17.768.7583.22143forward
CNT30143836Avena sativaMedicago truncatula19.5527.182.28158forward
CNT30661043Avena sativaTriticum dicoccoides45.5410090.76368forward
CNT30261302Avena sativaBrassica rapa39.2361.3278.23317forward
CNT30653881Avena sativaRosa chinensis33.1725.0980.22268forward
CNT30718631Avena sativaMalus domestica golden35.1549.4879.58284forward
CNT30477892Avena sativaArabidopsis halleri27.4820.7579.73222forward
CNT30363710Avena sativaSorghum bicolor24.0133.0586.08194forward
CNT30359610Avena sativaLactuca sativa24.3819.3578.68197forward
CNT30424172Avena sativaPapaver somniferum19.5522.6487.34158forward
CNT30570592Avena sativaVitis vinifera12.531.2786.14101forward
CNT3054595Avena sativaAmborella trichopoda18.0770.5382.88146forward
CNT30105598Avena sativaOryza longistaminata32.838.4683.02265forward
CNT30325711Avena sativaAsparagus officinalis31.8180.5686.38257forward
CNT30574680Avena sativaOryza barthii28.5925.2283.55231forward
CNT30115589Avena sativaOryza nivara28.5916.1983.55231forward
CNT30594668Avena sativaEragrostis curvula38.7492.8892.65313forward
CNT30603529Avena sativaOryza punctata45.347.8481.42366forward
CNT30174824Avena sativaVigna angularis50.9943.3779.13412forward
CNT30550386Avena sativaOryza brachyantha29.0885.4583.4235forward
CNT30336663Avena sativaCynara cardunculus21.9137.984.75177forward
CNT30723923Avena sativaLupinus angustifolius17.4568.7884.4141forward
CNT3064271Avena sativaSelaginella moellendorffii33.2948.9179.18269forward

Expression of CNT30244810

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MAGERRGGGGVWCDGGRWAGGEENELKCERGPPFV

>peptide 2 (41 aa)
MRGTRGGRSGRPREGWARQHRGGAARTWGSAGGARCSPSCL*

>peptide 3 (48 aa)
TYRINMPPISLLLWMLKWITINFTCASQQEPCTNPLCQTQHIQGSHDI*

>peptide 4 (96 aa)
MGSTTSWRSSSNLGFRRWCAMFSFLPVKKLSTTITLFPCSSSLSTRWLPTKPAPPVTTTRRGGGRKPAGTREGEEWETKEKMGLWSTTLEGDRENR*

Sequence

>CNT30244810
ACCTATAGGATTAACATGCCCCCAATAAGTCTCCTTCTGTGGATGCTCAAGTGGATCACCATAAACTTCACTTGTGCTAGTCAACAAGAACCTTGCACCA
ATCCTCTTTGCCAAACCCAACATATTCAAGGTTCCCATGACATTTGATATGATCGTCTTGATGGGGTTGAACTTGTAGTGCACGGGCGATGCGGGGCACG
CGAGGTGGTAGATCCGGTCGACCTCGAGAAGGATGGGCTCGACAACATCGTGGCGGAGCAGCTCGAACCTGGGGTTCCGCAGGTGGTGCGCGATGTTCTC
CTTCCTGCCTGTGAAGAAGTTGTCCACCACGATCACGCTATTCCCCTGCTCCAGCAGCCTGTCGACGAGGTGGCTGCCCACGAAGCCCGCCCCGCCGGTG
ACGACGACGCGGCGAGGCGGCGGGCGGAAGCCCGCGGGGACCCGGGAGGGGGAAGAGTGGGAGACAAAGGAGAAGATGGGGCTGTGGTCGACGACGCTAG
AGGGTGATAGAGAGAATAGGTAGGGGCGGAGGAGGAAGAAGGAGGTGGCGATGAGCGCGCCGAGGAGGACGAAGAGGAGGCGCTGCTCGCGGAGAAGGTA
GCCGACCCAGGTGCGCGGACCGGGGCGCGCGGGCTTGGAGACCTTGGACGCCGGCGCGTGCGCCGGCGAAGGGGCGTGGGTAGGGGACTTGTGGAGCTGC
TTCATGGCGGGAGAGCGGCGAGGAGGAGGCGGTGTTTGGTGCGATGGGGGAAGGTGGGCAGGAGGAGAAGAAAACGAGCTCAAGTGTGAGAGGGGTCCTC
CATTTGTT