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Detailed information on CNT30244799


BLAST search results

BLAST vs Swiss-Prot:
sp|P27807|H2B1_WHEAT, E-value = 9e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518188Avena sativaJuglans regia38.7231.5684.89278forward
CNT3072234Avena sativaQuercus suber25.7729.3781.62185forward
CNT30630598Avena sativaVigna unguiculata37.0547.7681.95266forward
CNT30180212Avena sativaSecale cereale44.1541.8896.21317forward
CNT30304304Avena sativaTriticum aestivum43.8762.7596.19315forward
CNT30220727Avena sativaHordeum vulgare55.2950.989.67397forward
CNT30396055Avena sativaTriticum turgidum44.1538.893.38317forward
CNT30586986Avena sativaMusa acuminata35.6572.3288.28256forward
CNT30439348Avena sativaAegilops tauschii52.0964.8293.85374forward
CNT30660053Avena sativaTriticum dicoccoides41.3644.896.97297forward
CNT30451774Avena sativaSaccharum spontaneum64.3552.3891.13462forward
CNT30129800Avena sativaCorymbia citriodora40.1135.7888.54288forward
CNT30684130Avena sativaTriticum urartu63.7963.1793.23458forward
CNT30722585Avena sativaTriticum spelta43.8742.9796.19315forward
CNT30363947Avena sativaSorghum bicolor63.9355.9189.98459forward
CNT30359864Avena sativaLactuca sativa16.9929.4786.07122forward
CNT3052765Avena sativaAmborella trichopoda19.9228.1588.81143forward
CNT30496069Avena sativaDigitaria exilis53.7648.3791.45386forward

Expression of CNT30244799

Peptides detected in this lncRNA

>peptide 1 (42 aa)
IQSDTATLQSQIEIAAMFPQQGQFLQYGQFQNEHEQLTTAYD*

>peptide 2 (49 aa)
MVGFLLYRASFADSPASFSKMSLMKEFMMDMALEEMPMSGCTCFSTLKM*

>peptide 3 (28 aa)
MGDSRRRGAGGGVSLGGRRTGGELLGDEM

Sequence

>CNT30244799
GATTCAGAGTGATACAGCAACATTACAATCTCAGATCGAAATAGCAGCGATGTTCCCACAACAAGGACAATTCTTACAGTATGGCCAATTTCAGAACGAA
CACGAACAGCTAACTACAGCCTACGACTGAAAACCTCAACCTGACAGCGAACCAGACGAGATCGGGAACAGACTAAGAAGAGGTGAACTTGGTGACGGCC
TTGGTGCCCTCGGACACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGT
ACCGCGCCAGCTTCGCCGACTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGG
GTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTAGGTCTCGACGCTCTTCTTGGACTTCTTCTTGCCCTTCTTCTCGCCGCCCTCCTTGGAGGCG
GTCTTGCCGGCCGGCAGCCGCTTCTCGGCCTTGGGCTTCTTGCCGGCGGGGGTCTTCTTGGCCTTCTCCGTCGCGGGCTCCTCCTCGACGGGCTTCTTCT
CCGCCGGCTTCTTCTCTGCCTTGGGGGCCATGGGTGATTCTCGGAGGAGAGGAGCTGGTGGTGGTGTTTCGCTGGGAGGAAGAAGAACTGGTGGGGAATT
GCTTGGAGATGAGATGTG