Detailed information on CNT30244584


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676593Avena sativaSetaria viridis28.118.4492.16102forward
CNT30290212Avena sativaTriticum aestivum44.6371.3794.44162forward
CNT30366141Avena sativaSorghum bicolor29.7515.5890.74108forward
CNT30151725Avena sativaBrachypodium distachyon45.7358.2593.37166forward
CNT30101296Avena sativaOryza rufipogon44.928.3594.48163forward

Expression of CNT30244584

Peptides detected in this lncRNA

>peptide 1 (36 aa)
AEAHTGRWSPHDEIDRLNKASGGHGDSMQSNDDRQY*

>peptide 2 (64 aa)
MLLYCSGKILGNSSVESRSAVHSFSAGDFTSTTNSTLDAIARSTGCRYKEKLLLAGYSALVISEM

Sequence

>CNT30244584
GGCAGAGGCACACACGGGTCGATGGTCGCCGCACGATGAGATCGATCGGCTAAACAAGGCGAGTGGAGGACACGGCGACAGCATGCAAAGCAACGACGAC
AGACAATACTAGTTCTTGAGGAGGCGGACTGTGCCGGCAGACTTGCCGTCGCCCTCGACGATCTCGATGCTCTTGTACTGCTCGGGGAAGATCTTGGGGA
ACAGCTCCGTCGAATCACGCAGCGCCGTCCACAGCTTCTCCGCCGGCGACTTCACCTCCACCACCAACTCGACCTTGGATGCCATCGCTCGATCGACCGG
TTGCAGATACAAGGAAAAGCTCTTGCTAGCTGGCTACTCCGCCTTAGTGATCAGTGAAATGAC