« Back to Avena sativa search


Detailed information on CNT30244472


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524316Avena sativaSetaria italica10.4326.1292.1176reverse complement
CNT30227197Avena sativaHordeum vulgare29.950.2382.11218reverse complement
CNT30348730Avena sativaEragrostis tef24.6973.4782.78180forward

Expression of CNT30244472

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MVIMSLLILSLTINSATADCGCCSAARAKACCFGCIAVGGTDTICKNTCCFPCFLDRSGVPNMEEVVGKMQEIGLDAKMKKMEFLAKMEAKE*

>peptide 2 (58 aa)
MHVCMCMRQQVYLVVLVPCNKAIDNVHWYMCHVCSYIVFGTLLLLLYVYAYSVFNFSLD

>peptide 3 (40 aa)
MLRLLPKCMPFRRICCIASSYGQVMLMFPFNKLSSVWGNL*

Sequence

>CNT30244472
GCCAATCAAGAAGAACAACACAACACAAACCCAAGAAACATAGCTACATAACCAAGATAGTCAGCGGTAGAAGGTGGCAATAGAGGGCCAGAGGACTACC
AGTTTGATGGTGATCATGTCCCTGCTCATCTTGAGCCTGACCATCAACTCAGCCACGGCAGATTGTGGCTGCTGCTCAGCCGCCCGGGCAAAAGCATGCT
GTTTTGGTTGTATTGCAGTGGGTGGCACTGACACAATCTGCAAGAACACTTGCTGCTTTCCCTGTTTTCTTGACCGTTCCGGGGTTCCTAATATGGAAGA
AGTTGTTGGTAAGATGCAAGAAATAGGATTGGATGCTAAGATGAAAAAAATGGAATTTCTTGCTAAGATGGAAGCGAAGGAGTAAAGCGATATGCTTCGA
TTGTTGCCAAAATGTATGCCATTCAGACGCATATGTTGCATTGCTTCAAGCTATGGCCAAGTTATGTTAATGTTTCCCTTCAATAAATTGTCATCTGTAT
GGGGCAATCTCTAGTCGATACACCATGTGTTGGTCTCGACTAGATATATGACATGCATGTGTGCATGTGTATGCGCCAACAAGTCTATTTAGTTGTTCTT
GTTCCATGTAATAAGGCCATAGACAATGTCCACTGGTATATGTGCCATGTATGTTCTTATATAGTTTTCGGAACGCTATTATTATTATTATATGTCTATG
CATATTCTGTATTTAATTTTTCTCTCGAT