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Detailed information on CNT30244415


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 3e-149

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30441267Avena sativaAegilops tauschii63.0568.490500forward

Expression of CNT30244415

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTGVSCLCSPGECGGGGGFRGHTDVVFKGAE

>peptide 2 (32 aa)
MARRLFLSSFTFSSANASGSSARPRGSKLPPG*

>peptide 3 (29 aa)
MAQRLWITSNSLFFAKVSGSAESPAVSQP*

>peptide 4 (61 aa)
MRASPKSVDDGRFFTIFPAKVEEETDMVVVVIGVYDRCVLFVFSWRVWRWRWFQRTHGRGI*

>peptide 5 (38 aa)
MPRGRRPGREGQSCRPGRAGQRSHLVGRQQRGTPRRHP*

Sequence

>CNT30244415
TGAACAAAGAAGCCGAACATCGAAAACATGGCTAGGCGACTGTTCTTGAGTTCCTTCACCTTCAGCTCAGCAAATGCCTCGGGGTCGTCGGCCAGGCCGA
GAGGGTCAAAGCTGCCGCCCGGGTAGAGCGGGTCAACGATCTCACCTAGTGGGCCGCCAGCAACGCGGTACCCCTCGACGGCACCCATGAGCACAACCTG
GCAGGCCCAGATAGCGAGGATGCTTTGTGCGTGGACGAGGCTAGGGTTGCCGAGGTAGTCGAGGCCACCCTCACTGAAGATCTGGGAGCCGGCCTTGAAC
CAGACAGCCTCACCAAACTTGACACCATTTCGGGCAAGCAACTCAGGGAAGACACATCCCAGTGCCCCGAGCATGGCCCAACGACTGTGGATCACCTCCA
ACTCCCTGTTCTTCGCGAAAGTCTCAGGGTCAGCCGAAAGTCCGGCGGTGTCCCAGCCATAGTCACCGGGGAACTCACCGGTCAGGTAGCTCGGGGGCTC
ACCGGATAGCGGGCCGAGGTAGAGCACACGGTCAGCACCGTACCATGGGCTACCAGAGGATACCTGCTTAGCCTTCGCTGCGGTCTTGCGCATCGTAATG
CGGGCCTCGCCGAAAAGTGTGGACGATGGAAGATTCTTCACTATCTTTCCAGCGAAGGTCGAGGAGGAGACAGACATGGTGGTGGTGGTGATTGGAGTGT
ATGACCGGTGTGTCCTGTTTGTGTTCTCCTGGAGAGTGTGGAGGTGGAGGTGGTTTCAGAGGACACACGGACGTGGTATTTAAGGGAGCGGAG