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Detailed information on CNT30244373


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LGH8|H2B8_ORYSJ, E-value = 2e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674619Avena sativaSetaria viridis49.8160.4792.22257forward
CNT30553215Avena sativaOryza glaberrima47.4841.6791.43245forward
CNT3052709Avena sativaAmborella trichopoda31.9831.4986.06165forward
CNT30108786Avena sativaOryza longistaminata50.977.7785.55263forward

Expression of CNT30244373

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MGAAGFSGEEGVVVFRWKVRDRVGDCRWV

>peptide 2 (30 aa)
PSAANFLQPDTFRTQAEASNDLTTDGNRAV*

Sequence

>CNT30244373
CCCATCGGCAGCAAATTTCTTACAACCAGACACGTTCAGAACACAAGCAGAGGCATCTAATGATCTAACTACAGACGGAAACAGAGCAGTCTAGGAGGAA
GTGAACTTGGTGACGGCCTTGGTGCCCTCAGAGACAGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGATATGCCGATGTCGGGGTGCA
CCTGCTTCAGCACCTTGAAGATGTAGATCTTGTAGGTCTCGACGCTCTTCTTGGCCTTCTTCTTCCCCTTCTTGCCCTCGCCGCCCTCCTTGGACGAGGT
CTTGCTCGCCGGCAGACGCTTCTCCGCCTTGGGCTTCTTCCCGTCCGGGGTCTTCTCGGCCTTCTCCGCCGCGGGCTCCTCCTCCACGGGCTTCTTCGCC
GCCGGCTTCTTCTCCGCCTTGGGGGCCATGGGTGCTGCTGGTTTCTCCGGAGAGGAAGGTGTGGTTGTTTTTCGCTGGAAGGTGCGAGATCGGGTGGGGG
ATTGCAGATGGGTTGT