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Detailed information on CNT3024422


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 7e-142

BLAST vs NONCODE:
NONGMAT001702, E-value = 4e-156

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727585Populus trichocarpaCorchorus capsularis88.4750.0785.78675forward
CNT30233904Populus trichocarpaBrassica oleracea81.1367.583.04619forward
CNT30440472Populus trichocarpaAegilops tauschii43.1255.2985.11329forward
CNT30614135Populus trichocarpaArabis alpina69.8634.1784.62533forward
CNT30127375Populus trichocarpaCorymbia citriodora68.5593.7386.04523forward
CNT30603788Populus trichocarpaOryza punctata83.2253.983.94635forward

Expression of CNT3024422

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MGFVGIILIIPASPFFRNLGSFSNSFPDRLSILVRISANLTAM*

>peptide 2 (96 aa)
MMITWEVKFAASLAGSSFEFEATKPRFRSFTATFLTLNPTLSPGRASWSASWCISTDLTSVVSPVGPKVTIVPGLMTPVSTRPTGTVPIPPILYTS*

Sequence

>CNT3024422
AACCAATGAATAGACTAGTGACAAGAACCCACTCTTGATTTATATTATAGCATCTAGTTGCATCATCCTGCACAGTTCACTTGCCACCCTTCTTGGCAGC
AGATTTGGTCACCTTAGCACTAGAAGCATCCTTTTTCTCCACGTTCTTGATCACTCCCACAGCAACAGTCTGGCGCATATCCCTCACAGCAAAACGTCCA
AGTGGGGGATACTCTGAGAAAGTCTCCACCACCATGGGCTTCGTGGGAATCATCTTAATCATACCTGCATCACCGTTCTTCAGAAATTTAGGTTCCTTCT
CCAACTCCTTCCCTGATCGCCTGTCAATCTTGGTGAGGATCTCAGCAAATTTGACAGCAATGTGACAGGTGTGGCAGTCAAGAACAGGGGCGTAACCATT
TCCGATCTGCCCAGGATGGTTCATGATGATCACCTGGGAGGTGAAGTTCGCAGCCTCCTTGGCGGGATCATCCTTCGAGTTTGAGGCAACAAAACCACGC
TTCAGATCCTTCACGGCAACATTCTTAACATTAAATCCAACATTGTCACCGGGAAGAGCCTCTTGGAGTGCTTCGTGGTGCATCTCAACAGACTTAACTT
CAGTAGTTAGTCCAGTTGGCCCGAAAGTGACAATCGTACCAGGCTTGATGACACCAGTTTCCACACGACCAACTGGGACCGTTCCAATACCACCAATCTT
GTACACGTCCTGAAGGGGGAGACGGAGGGGCTTGTCCGAGGGCCTCTTGGGCTCCTGGATCTG