Detailed information on CNT30244214


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595814Avena sativaOryza meridionalis47.1536.991.94124forward
CNT3099786Avena sativaOryza rufipogon71.8641.1887.83189forward

Expression of CNT30244214

Peptides detected in this lncRNA

>peptide 1 (86 aa)
CGILVLLVLGHQCKKAFLLNIAVNCSLTRRNISWIEVELPTKVDDIERPVGGMSHTLDFTLLGIHSTKYDEFLFWTFSICSSTSLVL

>peptide 2 (43 aa)
MTSRGLWEGCHTHLTSHCWGSTQQSTTSSCSGRSASAHQPPWCS

>peptide 3 (35 aa)
LWHPGTAGTRPPVQESLPPEHSCELLAHTTEHLLD*

Sequence

>CNT30244214
CTGTGGCATCCTGGTACTGCTGGTACTCGGCCACCAGTGCAAGAAAGCCTTCCTCCTGAACATAGCTGTGAACTGCTCGCTCACACGACGGAACATCTCC
TGGATTGAGGTTGAGTTGCCGACGAAGGTGGATGACATCGAGAGGCCTGTGGGAGGGATGTCACACACACTTGACTTCACATTGTTGGGGATCCACTCAA
CAAAGTACGACGAGTTCTTGTTCTGGACGTTCAGCATCTGCTCATCAACCTCCTTGGTGCTCA