Detailed information on CNT30244035


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 1e-136

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30576230Avena sativaOryza barthii4.5524.4486.1565forward

Expression of CNT30244035

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MCLPLFMATNTLSTSSPGDLVFSPVKYSVPSSLRTKR*

>peptide 2 (37 aa)
MCLPLFMATNTLSTSSPGDLVFSPVKYSVPSSLRTKR*

>peptide 3 (32 aa)
MSCPRTKWMPVLDSFDRSELPQKQNIDMKTKD*

>peptide 4 (65 aa)
MRFCCAAVPFSTAHRADSTSLGSAARSSSSNVASLANTEVCTSRSASPLAKACSTRTARIFCISG*

>peptide 5 (68 aa)
MTGTRRCGSAVRQCRSPRHTGQTRPPLEAPHGAPPRMWRAWRTLKSAHPARPHHWPRRAPRELHASSA*

Sequence

>CNT30244035
GGAGAACCACATATTACATGTTTCCATTAGATTCCTGGGAGAAATCAGTAAGCGAGGTACTACAAACCAACAATAGGGAACTATAGATGCCAGATTGAGA
GCTCAGCGAAGACCTTCCAGTTTGTACCACGTCGCTGGAGCTACAACCCCGAAGATACCACTGACCACTCAAGCACAACCTTTCCGTTCTGAACTTTTCG
CATGTCATGTCCTCGCACCAAATGGATGCCAGTACTAGATTCTTTTGACCGTTCAGAGTTGCCTCAGAAACAGAACATTGATATGAAAACAAAGGACTAG
TCCAATATCATTATATACTTATTATCACAAAGTGTACCCTTTTACTGTAACTAACACCATATAAGTTGTACAGGCTAAACACCACTACCCAGTAATGTAA
TTATCTTTTCCAGCTGGCACTGCACCCGTGGAAGAACGTTGCCAACATTGACAACCGGAAATACAACGAAAAAACAGTATGAACCCTTCTGAATTCTGAA
GTGCTCAATTTTCAGTTCTTTGATTCAGTCTTCAGCAGATAGGCAGGGGCTCACCGTTCCACTCCTTGAGGCACTCAAGCAGAGCGTCGATGTGCTTGCC
CTTGTTCATGGCAACGAACACCTTGTCCACCTCTTCACCAGGAGACCTCGTCTTCTCTCCGGTCAAGTACTCCGTCCCGAGCTCCTTGCGCACGAAGCGG
TAGAGCGGGTNNNNNNNNNNCCTTCTGAATTCTGAAGTGCTCTATTTTACAGTTCCTTGATTCAGTCTTCAGCAGATAGGCAGGGGCTCACCGTTCCACT
CCTTGAGGCACTCAAGCAGAGCGTCGATGTGCTTGCCCTTGTTCATGGCAACGAACACCTTGTCCACCTCTTCACCAGGAGACCTCGTCTTCTCTCCGGT
CAAGTACTCCGTCCCGAGCTCCTTGCGCACGAAGCGGTAGAGCGGGTATGACCGGCACTCGGCGATGCGGTTCTGCTGTGCGGCAGTGCCGTTCTCCACG
GCACACCGGGCAGACTCGACCTCCCTTGGAAGCGCCGCACGGAGCTCCTCCTCGAATGTGGCGAGCTTGGCGAACACTGAAGTCTGCACATCCCGCTCGG
CCTCACCATTGGCCAAGGCGTGCTCCACGAGAACTGCACGCATCTTCTGCATAAGTGGGTAGTTGGCGCTGCAAGGGTCATCTGCGTAGGCGAACACGGC
CTCACGGTCGATCGTCAAGAGCAGGTCCTTCTCGCAGAAGCGTGCGTTGTGGAGATTGCCATTGTGATTGGTGCTCAGGGTCTTCCTTGCCACCGTCTTC
ACACAGTTCTTGACAGCATTCTTGACATTCTCCTCAAGGTGGCGCAGATCGATAGCTTGGCACAACGCAACCATGAATGTTGAGGACATGAGCTTCAGAA
TGTCGATGGCCTCAGCGGTCTTCCTGGA