Detailed information on CNT30243815


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 3e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523988Avena sativaSetaria italica97.6588.4582.82291forward
CNT30549214Avena sativaIpomoea triloba37.2516.5486.49111forward
CNT30565935Avena sativaActinidia chinensis33.8920.7886.14101forward
CNT30441862Avena sativaAegilops tauschii34.5611.7491.26103forward
CNT30463851Avena sativaSaccharum spontaneum46.9823.6192.86140forward
CNT30228519Avena sativaAnanas comosus34.5613.3687.38103forward
CNT30365918Avena sativaSorghum bicolor17.1121.4390.251forward
CNT30596095Avena sativaOryza meridionalis26.8529.9696.2580forward
CNT30101300Avena sativaOryza rufipogon50.3420.7888.67150forward
CNT30116476Avena sativaOryza nivara35.5716.5493.4106forward

Expression of CNT30243815

Peptides detected in this lncRNA

>peptide 1 (97 aa)
RLRALVDGGVEAVRRCVGGEPLLDGEELLRASQVGPRDRDLDVVAVPAVVAALVVVVAVLHHPAPPLQVGDPDARAVRAQQRHADRRVRPALPDRPRP

Sequence

>CNT30243815
CCCGACTTCGAGCACTTGTCGACGGTGGCGTAGAGGCGGTACGGCGATGCGTCGGTGGCGAGCCACTGCTCGACGGTGAAGAGCTGCTGCGCGCATCCCA
GGTGGGGCCCCGTGACCGTGACCTCGACGTAGTTGCAGTACCAGCCGTGGTTGCCGCGCTCGTAGTAGTCGTGGCCGTCCTCCATCATCCCGCCCCACCG
CTCCAGGTCGGCGATCCGGATGCCCGTGCCGTCCGAGCCCAGCAGCGTCACGCCGATCGCCGAGTCCGTCCCGCCCTTCCAGATCGACCCCGTCCGCA