Detailed information on CNT30243746


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30195004Avena sativaPisum sativum5.3133.2292.7196forward
CNT30425623Avena sativaPapaver somniferum6.9727.6393.65126forward

Expression of CNT30243746

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MGFFPPPAARSATTLLDLLRRVLDLSILDQGQALIVVVACGDYQDDAEELLPLLLPPHDKLCRKLNFAQ*

>peptide 2 (63 aa)
MRDEGPTSLLLLNTGPGTVETGSWKYAGSLGSGSVSPSLANIETTVDIVGRSSAWAWMQSRPT*

>peptide 3 (99 aa)
EIFEFPFLPSLASHQGDSGRQLSHPSLPRPRSPTSSLTPPSPASPGSSPFHPSLSRIIGALSLMCVAALPFLSRRRLSRALQRQRGSFVDVRSPLMKRG*

>peptide 4 (88 aa)
KFLSFLFYPRSRRTRGTQGDSSLIPRCLAPVRRRALSPLPLPRRRGALPFTPPSPASSAPSPSCASLPCPSSRAVASLALSSGSEVPS*

>peptide 5 (34 aa)
MKRREYIITPILSRVFHTLTQTKFKSVIKPRPGD*

>peptide 6 (38 aa)
MPEVKLCSVMLLGVYLQLHYLQRRRIASAEKVSCCCCC*

>peptide 7 (52 aa)
MRCCCRLAGDEVQEPWAIRTIAGEAATPWHFLAFSPGRQYVLIGRTRCRKRC*

Sequence

>CNT30243746
GAAATTTTTGAGTTTCCTTTTTTACCCTCGCTCGCGTCGCACCAGGGGGACTCAGGGAGACAGCTCTCTCATCCCTCGCTGCCTCGCCCCCGTTCGCCGA
CGAGCTCTCTCACCCCTCCCTCTCCCGCGTCGCCGGGGAGCTCTCCCTTTCACCCCTCCCTCTCCCGCATCATCGGCGCCCTCTCCCTCATGTGCGTCGC
TGCCTTGCCCTTCCTCTCGCGCCGTCGCCTCTCTCGCGCTCTCCAGCGGCAGCGAGGTTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTAG
GGAAAGCTTGAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGAGTTATACATTTGTGTATTGATAAGCCCGTTTAAATGGGATT
TTTTCCTCCTCCGGCGGCCAGATCTGCGACGACGCTGCTAGATCTTCTGCGGCGGGTGCTCGATCTGTCAATCCTAGATCAAGGCCAAGCTCTAATTGTG
GTGGTCGCCTGCGGGGACTACCAAGACGACGCAGAGGAGTTGCTGCCGCTGCTGTTGCCTCCCCACGACAAGTTATGCCGGAAGTTAAACTTTGCTCAGT
GATGTTACTGGGAGTATACCTGCAACTTCATTATCTTCAGAGGAGGAGAATAGCTAGTGCAGAGAAGGTGAGCTGCTGCTGCTGCTGTTGAAGGTTGCCG
ATGAACTGTCGGTGAAGTGCTGATGATGATGTGCTGCTGCTGAGTATCGCCAGTGAACTGCCGGCGAGGTGCTGCTTAATATCGCCGGTGAACTGCCGGT
GAGGTGCTACTGATGGTGTTGCTGCTGTAGATCGCCGGCGGCGAGGTGCTAAGACTTGCCGGGGATGAGGTGCTGCTGTAGACTTGCTGGCGATGAGGTG
CAGGAACCCTGGGCGATCAGGACCATAGCAGGAGAGGCGGCTACACCTTGGCATTTTCTGGCCTTTTCCCCTGGCCGGCAATACGTCCTGATCGGGCGCA
CCAGGTGCCGGAAGCGGTGCTAGACGTGCGTGGAGGTGGTCGCCGGCCTAGGTGCTCTGCTGGATCTGCTGGTGCGCGCGGAGGTAGCTCAGCTAGATGC
CGTGCTCTGCTGGATCGATTCCGACGAGTTGGAGGTGATCCGTTGGACGCTGGGTGCTCTGATCGGGAGGATCGATTCTACTAGCTGAGTTAGAGCTGAT
CGGGAGGATCCCTAATTCAAAATCTGGATCGGACAGGTCGCGAGGGCAGTTTTGTCCAATTCGTGTGTATTTAGCGTTGTCGGAACGTTTTCTAAAACGT
CTATAATATGAAACGGAGGGAGTACATAATTACTCCTATATTATCACGTGTGTTTCACACACTTACACAAACTAAATTCAAGTCTGTGATCAAGCCTAGG
CCTGGTGATTAATAACAGATATATTTAATTTGTTTACATTATTATTGTACTGGAGAATACTCAACAATCACCAGCGAGGAAGTACTGAAATAAATCTTTA
GACAGATAATTCATGTCACATTGATGCGAGACGAAGGCCCGACGTCGCTGCTCCTTCTCAATACCGGGCCCGGTACGGTTGAAACTGGAAGCTGGAAGTA
TGCTGGCTCATTGGGCTCTGGGAGCGTGAGCCCATCGCTGGCCAACATAGAGACGACTGTGGACATAGTGGGCCGGTCGTCAGCGTGGGCCTGGATGCAG
AGCAGGCCCACATGAATGCACTTAACCACTTCCCGAACTGAATAATTTGGCCCGATTAGCGGGTCCACCATGTCGTACCATTTAAGGTCCTTCCAGAGCT
GGTAAGC